Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIPK24.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35410 685 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 610 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT1G30270 528 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 525 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT2G26980 515 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G01140 498 / 3e-175 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G45820 418 / 6e-144 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT1G48260 409 / 2e-140 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT4G30960 398 / 5e-136 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G25110 388 / 2e-131 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130500 [exp] 830 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.002G109000 [exp] 548 / 0 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.001G222600 [exp] 546 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 534 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 534 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 529 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 510 / 4e-180 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 505 / 2e-178 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.011G067500 [exp] 427 / 1e-147 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019411 [exp] 747 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10043264 [exp] 642 / 0 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 619 / 0 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10042816 [exp] 525 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 525 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 503 / 4e-177 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 501 / 1e-176 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 476 / 3e-167 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10036280 [exp] 412 / 1e-141 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 411 / 2e-141 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.006G068400.1 pacid=42769316 polypeptide=Potri.006G068400.1.p locus=Potri.006G068400 ID=Potri.006G068400.1.v4.1 annot-version=v4.1 ATGATGAAGAAAGTAACGAGAATGGTAGGAAAATATGAAGTTGGCCGTACAATTGGCGAAGGAAACTTCGCCAAGGTCAAATTTGCTCAAAATAGAGAAA CTGGAGAGAGTGTAGCCATGAAAATTCTCGCTAAATCAACCATTCTCAAGCACAAAATGGTTGATCAGATAAAAAGAGAGATATCAATCATGAAGATTGT GAGACATCCTAACATAGTTAGGCTGCATGAGGTTTTGTCGAGCCGGACGAAGATATATATAATTCTTGAGTTTGTTACTGGAGGAGAATTATTTGATAAA ATTGTTCATCAAGGAAGACTTTCCGAAAATGAATCGAGGCGGTATTTTCAGCAGCTTATAGATGCTGTTGCTCACTGTCACCGGAAGGGTGTGTACCACA GAGACCTGAAGCCTGAAAACCTTCTTCTTGATGCTTTTGGGAATTTGAAGGTTTCAGACTTTGGATTGAGCGCGTTGCGCCAGAAAGGGGTTGGACTTCT TCATACAACGTGTGGAACCCCAAATTATGTTGCACCTGAGGTACTTGGTCACCAGGGTTATGATGGAGCTGCTGCTGATGTGTGGTCATGTGGAGTCATC CTCTTTGTTCTAATGGCTGGATATCTTCCATTTGAGGAGATAGACCTTCCAACCTTGTGCCGAAAGATAAATGCTGCAAAGTATTCTTGTCCATTTTGGT TTTCTCCTGTGGCAAAAGCATTGATAGATAAGATACTCGATCCCAATCCTAAAACTCGTATAGGGATTGAGGGAATTAAAAAACATCCATGGTTTCGGAA AAGCTATGAGCCTGTTGGACATAGTGAAGAAGAGGAAGTGAATTTGGATGATGTTCATGCAGTTTTTGATGACATCGAGGATCATTATGTAGCAGAGCAA TTGGAGAACAGTGAGGGCGGTCCTTTGGTAATGAATGCATTTGAGATGATTGCCCTATCTCAAGGGCTGAATCTATCAGCATTGTTCGATAGACGTCAGG ATTATGTAAAAAAACAAACTCGTTTTGTATCCCGCAAACCAGCAAAAGTTATAATTTCAGCATTTGAAGCTGTTGCGGAATCAATGAATCTCAAGTTCCA TACACATAATTACAAGACAAGACTCGAAGGAATATCTGAAAATAAGGCTGGACAATTTGCAGTTGTTCTGGAGGTTTATGAAGTTGGTCCATCACTTTTC ATGGTAGATGCACGGAAGGCATCTGGGGAAACTCTTGAATATCACGAGTTCTACAAGAACTTCTGCGCTCAGCTAGAAAATATCATCTGGAAACCTCCAG AAGGGTGCTAA
AA sequence Show only first row Show all	>Potri.006G068400.1 pacid=42769316 polypeptide=Potri.006G068400.1.p locus=Potri.006G068400 ID=Potri.006G068400.1.v4.1 annot-version=v4.1 MMKKVTRMVGKYEVGRTIGEGNFAKVKFAQNRETGESVAMKILAKSTILKHKMVDQIKREISIMKIVRHPNIVRLHEVLSSRTKIYIILEFVTGGELFDK IVHQGRLSENESRRYFQQLIDAVAHCHRKGVYHRDLKPENLLLDAFGNLKVSDFGLSALRQKGVGLLHTTCGTPNYVAPEVLGHQGYDGAAADVWSCGVI LFVLMAGYLPFEEIDLPTLCRKINAAKYSCPFWFSPVAKALIDKILDPNPKTRIGIEGIKKHPWFRKSYEPVGHSEEEEVNLDDVHAVFDDIEDHYVAEQ LENSEGGPLVMNAFEMIALSQGLNLSALFDRRQDYVKKQTRFVSRKPAKVIISAFEAVAESMNLKFHTHNYKTRLEGISENKAGQFAVVLEVYEVGPSLF MVDARKASGETLEYHEFYKNFCAQLENIIWKPPEGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G068400 [exp]	0	1	Pt-CIPK24.1
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	2.44	0.7076
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.011G068600 [exp]	5.65	0.6987	GSK1.1
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.002G195700 [exp]	11.74	0.6662
AT4G30510		ATATG18B	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G101200 [exp]	12.12	0.6541
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	13.63	0.6928
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Potri.005G195400 [exp]	14.31	0.6812
AT2G15230		ATLIP1	lipase 1 (.1)		Potri.009G094900 [exp]	17.49	0.6427
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.002G177600 [exp]	20.61	0.6275	Pt-GIF2.1
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	23.32	0.6096
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Potri.010G222800 [exp]	24.08	0.6425

Compare expression of checked genes

Potri.006G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.