Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25490 679 / 0 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 646 / 0 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 155 / 1e-39 F-box/RNI-like superfamily protein (.1) AT5G27920 126 / 5e-30 F-box family protein (.1) AT5G23340 109 / 2e-25 RNI-like superfamily protein (.1) AT5G01720 94 / 1e-19 RNI-like superfamily protein (.1) AT2G06040 84 / 2e-16 unknown protein AT3G58530 78 / 3e-15 RNI-like superfamily protein (.1) AT1G21410 78 / 4e-15 SKP2A F-box/RNI-like superfamily protein (.1) AT1G47056 76 / 5e-14 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130800 [exp] 1125 / 0 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 813 / 0 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 803 / 0 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 136 / 3e-33 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 120 / 4e-28 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 112 / 2e-26 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 114 / 3e-26 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 112 / 1e-25 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 101 / 5e-22 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002165 [exp] 884 / 0 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 866 / 0 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 705 / 0 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 699 / 0 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 167 / 7e-43 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 126 / 1e-29 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10001264 [exp] 124 / 4e-29 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 119 / 3e-27 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 107 / 2e-24 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 106 / 3e-24 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G068500.17 pacid=42770338 polypeptide=Potri.006G068500.17.p locus=Potri.006G068500 ID=Potri.006G068500.17.v4.1 annot-version=v4.1 ATGCATTTAAGCTTTCTTGCTTCATTTCTTATCAGTTTCTTGGTACTTGCTGTCAGTTTGTGTGCCTTTTGTGCTGTTAATCAACGAGGCTTCTTCTTCG TCTTCTTCTTTTCATTTCTGTTGTTTCAGTCATGCCTACTCTTGTTAACTACAGTGGTAAATGATGAAATCTATTCTGGGGGCTCTTTCTATACAAATCC TTCCGACCTTGGTCGATTATATTCAATTGTATCCAATGTGGATGTATACAGCCCTGCTTGCAAGCGAGCTCGCATTAGTGCTCCTTTTCTCTTTGAATCA TCTGGGTTCGAGCAGAATATGCGACCATCAATTGAAGTTCTTCCAGATGAATGCCTTTTTGAGATCTTCAGACGCGTTCCTGAAGGCAAAGAGAGGAGTT CCTGTGCCTCTGTGTCCAAGAAATGGCTTATGCTTTTGAGCAGCATCAGGAGGTCTGAATTTTGCAACAGCAACCCTGTAGCTGAAGAAGAAAACGAAAC AGCAGCTCCTGTTTGTAATGATGTTGAAATGGTCTCTTGCGAAGACAACGGGGAAGTTGAGAGTGATGGTTACCTTACCAGGTCCTTGGAAGGAAAGAAA GCAACAGATATGAGACTGGCTGCCATTGCTGTTGGGACAAGTAGCCGTGGGGGCCTGGGCAAGCTGTTGATCCGGGGAAGCAACTCTGTTCGTGGGGTTA CCAACCGTGGTCTATCAGCAATAGCACGTGGTTGCCCTTCTCTAAGGGCTCTTTCTTTGTGGAACGTTCCTTTTGTTGGGGATGAAGGTCTATTTGAGAT CGCCAAAGAATGCCATTTGTTGGAGAAGCTTGACCTTTCCAACTGTCCTTCAATTTCCAACAAGGGTTTGATTGCAATTGCTGAGAACTGCCCTAATTTG AGCTCTTTGAATATTGAATCTTGTTCTAAGATTGGTAACGAAGGCTTGCAGGCAATCGGAAAGCTGTGCCCTAGGTTGCATTCAATCTCTATTAAAGACT GCCCTCTTCTTGGGGATCATGGAGTATCAAGTTTATTATCTTCAGCTTCTTCTGTATTAACAAGGGTGAAGCTTCAGGGTTTGAACATCACAGACTTCTC TCTTGCTGTAATTGGGCACTATGGGAAAGCTGTTACGAATCTTTCCCTTAGTGTTCTCCAGCATGTTAGTGAGAGAGGCTTTTGGGTCATGGGTAATGCT CAGGGTTTGCAAAAATTAATGTCTTTGACAATTACTTCATGCCGGGGGATAACAGATGTGAGTCTTGAAGCTATTGCAAAGGGTTCCTTGAATCTGAAGC AGATGTGCCTCCGCAAGTGCTGCTTTGTGTCTGATAACGGGTTGGTTGCTTTTGCCAAAGCTGCCGGATCTCTTGAGAGCCTGCAATTGGAAGAATGTAA CAGAATTACCCAGTCAGGGATCGTTGGTGCACTTTCAAACTGTGGAACAAAGTTGAAAGCTCTTAGTCTTGTGAAGTGCATGGGAATTAAGGATATGGCA CTCGGAATGCCAGTGCCCTCTCCTTGCAGCTATCTTCGATTTTTGTCAATTAGAAATTGCCCAGGATTTGGCAGTGCGAGCTTGGCTGTGGTAGGGAAGC TGTGCCCTCAACTTCAGCATGTTGACCTAAGTGGGCTTTGCGGAATTACAGATTCTGGGATTCTGCCACTGTTAGAGAGTTGTGAGGCAGGTCTTGTTAA GGTGAATCTTAGTGGTTGCATGAGTTTGACCGATGAAGTAGTTTCAGCCTTGGCTAGGCTACATGGTGGAACCCTTGAATTGCTGAATCTGGATGGTTGC AGAAAGATCACTGATGCTAGCTTGGTAGCAATTGCTGAAAATTGTCTGTTTCTCAGTGACCTAGATCTGTCAAAGTGTGCAGTCACTGATTCTGGCATTG CTGTCATGTCAAGTGCAGAGCAGCTCAATCTTCAAGTCCTATCCTTGTCAGGATGTTCTGAAGTATCAAACAAGAGCTTGCCTTGCCTAAAGAAAATGGG CAGGACCCTGGTGGGGTTGAACCTCCAAAAATGCAGTTCAATTAGCAGCAGCACAGTTGAGCTGCTTGTAGAGAGCCTGTGGAGATGTGATATCCTTTCA TAA
AA sequence Show only first row Show all	>Potri.006G068500.17 pacid=42770338 polypeptide=Potri.006G068500.17.p locus=Potri.006G068500 ID=Potri.006G068500.17.v4.1 annot-version=v4.1 MHLSFLASFLISFLVLAVSLCAFCAVNQRGFFFVFFFSFLLFQSCLLLLTTVVNDEIYSGGSFYTNPSDLGRLYSIVSNVDVYSPACKRARISAPFLFES SGFEQNMRPSIEVLPDECLFEIFRRVPEGKERSSCASVSKKWLMLLSSIRRSEFCNSNPVAEEENETAAPVCNDVEMVSCEDNGEVESDGYLTRSLEGKK ATDMRLAAIAVGTSSRGGLGKLLIRGSNSVRGVTNRGLSAIARGCPSLRALSLWNVPFVGDEGLFEIAKECHLLEKLDLSNCPSISNKGLIAIAENCPNL SSLNIESCSKIGNEGLQAIGKLCPRLHSISIKDCPLLGDHGVSSLLSSASSVLTRVKLQGLNITDFSLAVIGHYGKAVTNLSLSVLQHVSERGFWVMGNA QGLQKLMSLTITSCRGITDVSLEAIAKGSLNLKQMCLRKCCFVSDNGLVAFAKAAGSLESLQLEECNRITQSGIVGALSNCGTKLKALSLVKCMGIKDMA LGMPVPSPCSYLRFLSIRNCPGFGSASLAVVGKLCPQLQHVDLSGLCGITDSGILPLLESCEAGLVKVNLSGCMSLTDEVVSALARLHGGTLELLNLDGC RKITDASLVAIAENCLFLSDLDLSKCAVTDSGIAVMSSAEQLNLQVLSLSGCSEVSNKSLPCLKKMGRTLVGLNLQKCSSISSSTVELLVESLWRCDILS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.006G068500 [exp]	0	1
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G130800 [exp]	1.00	0.8039
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	7.14	0.6279	ERS1.1,ETR1
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.010G247500 [exp]	21.90	0.5859	EIN3C,CMEIL2.1
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	22.71	0.6308
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	31.74	0.5834
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.002G071100 [exp]	36.00	0.6022
					Potri.016G037200 [exp]	36.44	0.5654
AT3G59900		ARGOS	auxin-regulated gene involved ...		Potri.007G146401 [exp]	41.74	0.5531
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	53.88	0.5844
					Potri.010G060800 [exp]	68.86	0.5323

Compare expression of checked genes

Potri.006G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.