Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36240 510 / 2e-178 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 199 / 4e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 179 / 2e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 174 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 169 / 6e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 167 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 169 / 3e-45 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 166 / 3e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63070 167 / 4e-45 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G74580 167 / 1e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046100 [exp] 190 / 2e-53 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 186 / 6e-52 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G105700 [exp] 187 / 1e-51 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G050180 [exp] 184 / 2e-51 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 182 / 2e-50 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 181 / 4e-50 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 180 / 5e-50 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G038400 [exp] 178 / 4e-49 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 174 / 8e-49 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021362 [exp] 591 / 0 AT2G36240 559 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017041 [exp] 497 / 3e-175 AT2G36240 436 / 4e-151 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012328 [exp] 172 / 4e-46 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 171 / 7e-46 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 171 / 1e-45 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 170 / 2e-45 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 166 / 2e-44 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 163 / 3e-43 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 163 / 4e-43 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 163 / 8e-43 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G068700.1 pacid=42770090 polypeptide=Potri.006G068700.1.p locus=Potri.006G068700 ID=Potri.006G068700.1.v4.1 annot-version=v4.1 ATGTCGTTCAAAAAGAAAAAATTCACACTTCCTCCCATCATCAAAGCCCTTGATAAACTTCCATCACCGCCACCACAACCACCGCTTCCTCCTCTTCCAA AACCACCACCAACAACCCATTTAGCCCCTCTCCCCACTCTCACTCTCACACCTACCTCCAACCACACAAACCTCCTCCACTTCCTCAACTCCCATCTCAC AAAGATCCAACCTTTAACCCCTCAAAACCTCCTCCACTTCTTCAAAACCAAACTCCACCACCACCCACATTTCTCTCACTATGACTTTCATATTTTCAAC TGGGTTTCTACTATAGACTCTTTTAGTCATGATCATCAAACTTTTGAATGGATGGCAAGGACTCTTGCTATCACAAACAGGTTAGAGGAACTTGCTTTGC TTCTTCAATTTATGTCATCAAATCCTTGTCCTTGTAGTGAAGGTATATTTTCTTGTCCAAGAATTGAGCCCATATTTCAGTTTTGTATTAATGCTTACTG TAAAGCTAGGAAATTGGATGATGCTTTTTTAGCTTTTGAATGTATGAGGAAGTTGATTGATGGAAGGCCTAGTGTTGTTGTTTACAACATTTTGATTAAT GGGTGCGTGAAGTGTGGAGAACATGATAGGGCTATTGGGGTTTATGATAGGATGTTGAAGGATAGAGTTAAGCCTGATGTGTTTACTTTTAATATATTGA TCAGTAGTTATTGTAGGAATTACATGTTCGAATTGGCTCTGGAATTGTTTAGAGAAATGAAAGAGAAAGGATGTAGTCCTAATGTGGTTAGTTTTAATAC TTTGATTAAAGGGTTTTTTAGGGAGAGGAAATTTGAGGAAGGGGTTAAGATGGTGTATGAGATGATTGATTTGGGGTGTGAGATATCGAGTGTGACTTTT GAGATTTTGGTTGATGGACTTTGCAAGGAAGGGCAGGCTTCGGAGGCATGTGGATTGTTGATTGATTTTACGAGGAAAGGAGTTTTGCCAAGGAAGTTTG ATTCTTTTGGTCTTGTGGATATGCTTTGCAAGAAAAGAATGGCGGATAGAGCTTTGGAAGTGTTGGATGAGTTGTGGAGGAATGGAAATATTCCTAGCAT GATTTCTTGTACCACTTTGATAGAAGGTTTGAGAAAGTCTGGTAGAAGAGAGGAAGCGTTTGGATTGATGGAAAGGATGTTGAAAGAGAATATTGTTCCT GATATTATGACTTTTAATTGCCTGCTTCATGATCTTTGCAATGAGGGAAGAACAGTTGATGGTAACAAATTGAGATTATTGGCTTCTAGAAAGGGTTTGG ATGTAGATGAGATGACATATGACATTTTGGTATCTGGGTGTATAAGAGAGGGTAAAAGAAAGGAAGGGGAAGCTTTGGTGGATGAGATGTTAGATAAGGA ATTTATACCTGATCTTGCCACATATAATAGGTTCATAGATGGGCTTTCTAAAACAAGAAGTTCTGCACAATAG
AA sequence Show only first row Show all	>Potri.006G068700.1 pacid=42770090 polypeptide=Potri.006G068700.1.p locus=Potri.006G068700 ID=Potri.006G068700.1.v4.1 annot-version=v4.1 MSFKKKKFTLPPIIKALDKLPSPPPQPPLPPLPKPPPTTHLAPLPTLTLTPTSNHTNLLHFLNSHLTKIQPLTPQNLLHFFKTKLHHHPHFSHYDFHIFN WVSTIDSFSHDHQTFEWMARTLAITNRLEELALLLQFMSSNPCPCSEGIFSCPRIEPIFQFCINAYCKARKLDDAFLAFECMRKLIDGRPSVVVYNILIN GCVKCGEHDRAIGVYDRMLKDRVKPDVFTFNILISSYCRNYMFELALELFREMKEKGCSPNVVSFNTLIKGFFRERKFEEGVKMVYEMIDLGCEISSVTF EILVDGLCKEGQASEACGLLIDFTRKGVLPRKFDSFGLVDMLCKKRMADRALEVLDELWRNGNIPSMISCTTLIEGLRKSGRREEAFGLMERMLKENIVP DIMTFNCLLHDLCNEGRTVDGNKLRLLASRKGLDVDEMTYDILVSGCIREGKRKEGEALVDEMLDKEFIPDLATYNRFIDGLSKTRSSAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	0	1
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.015G091800 [exp]	1.41	0.8982
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	2.00	0.8663
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	8.12	0.8884
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.008G211100 [exp]	10.19	0.8464	PLDP1.1
					Potri.014G175100 [exp]	11.40	0.7877
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.012G110400 [exp]	12.32	0.8093
					Potri.002G220667 [exp]	12.48	0.8641
AT5G08630			DDT domain-containing protein ...		Potri.004G138900 [exp]	13.63	0.7886
					Potri.009G016766 [exp]	14.96	0.8616
					Potri.016G080101 [exp]	15.49	0.8314

Compare expression of checked genes

Potri.006G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.