Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 456 / 6e-159 Eukaryotic aspartyl protease family protein (.1) AT1G03230 430 / 5e-149 Eukaryotic aspartyl protease family protein (.1) AT5G19110 177 / 6e-51 Eukaryotic aspartyl protease family protein (.1) AT5G19120 170 / 2e-48 Eukaryotic aspartyl protease family protein (.1) AT5G19100 150 / 6e-41 Eukaryotic aspartyl protease family protein (.1) AT5G48430 142 / 7e-38 Eukaryotic aspartyl protease family protein (.1) AT2G39710 64 / 7e-11 Eukaryotic aspartyl protease family protein (.1) AT2G42980 54 / 1e-07 Eukaryotic aspartyl protease family protein (.1) AT3G59080 52 / 5e-07 Eukaryotic aspartyl protease family protein (.1.2) AT5G36260 52 / 5e-07 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203200 [exp] 541 / 0 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 493 / 9e-174 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 268 / 1e-85 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 266 / 8e-85 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.008G203100 [exp] 265 / 3e-84 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 260 / 4e-82 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 256 / 4e-81 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 257 / 5e-81 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 250 / 1e-78 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021936 [exp] 536 / 0 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 521 / 0 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 514 / 0 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 479 / 6e-168 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 387 / 2e-132 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 371 / 6e-127 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 358 / 2e-120 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 346 / 3e-116 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 246 / 9e-77 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10034035 [exp] 209 / 6e-63 AT1G03220 260 / 2e-82 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G068900.1 pacid=42768880 polypeptide=Potri.006G068900.1.p locus=Potri.006G068900 ID=Potri.006G068900.1.v4.1 annot-version=v4.1 ATGGCTCTCACTCATAATTTTCTTCTCCTCTTTTGCTCTCTTTTTCTTATTTCCAGTCCCCATTCTATAGCACAAACAACATTCAGGCCTAAAGCATTAG TCCTTCCTGTATCAAAAGATCCATCAAGTCTCCAATACCTTGCCCAAATTAACCAAAGAACCCCTCTAGTGCCTGTAGAGGTGACTCTTGATCTTGGTGG TCAATATCTTTGGGTTGATTGTCAGCAAGGATATGTCTCTTCGTCTAAAAAAAATCCAAGTTGCAACACTGCTCAGTGCTCCCTTGCAGTCTATAGGCTC AAGACATGCACTGTCGACAAAAAATTCTGTGTTTTATCCCCTGATAACACTGCGACACGCACTGGCACTTCTGATTACCTTACTCAGGATGTTGTTTCCA TTCAATCTACTGATGGATCAAATCCAGGCAGAGTTGTTTCAGTCCCTAATTTCCTCTTCAGTTGTGCTCCAACATTTATCCTGCAAGGTCTTGCTAAGGG AGTCAAGGGCATGGCTGGACTTGGAAGGACTAAGATCTCACTTCCTTCTCAATTCTCTGCTGCTTTTAGCTTTCCTAAAAAGTTTGCCATTTGCTTGACC TCTTCAAATGCTAAAGGTGTTGTTATCTTTGGAGATGGACCTTATGTTTTGCTTCCACATGCTGATGATCTTTCTCAGTCCCTCATCTACACCCCATTAA TTCTCAACCCTGTAAGCACAGCATCTGGTTACTTTGAAGGAGAGCCTTCCACTGATTACTTCATTGGAGTCAAGTCTATCAAGATCAATGAAAATGTTGT TCCATTAAACGCTTCATTGCTGTCCATTAACAGAGAAGGCTATGGTGGAACCAAGATTAGCACAGTAAATGCTTACACGGTGATGGAAACAACAATCTAC AATGCTGTCACTGACTCTTTTGTCAGAGAGCTAGCCAAAGCCAATGTCCCTAGGGTGGCATCTGTAGCACCTTTCGGAGCATGTTTCAACTCAAAGAACA TTGGCAGCACACGCGTTGGCCCAGCAGTGCCTCAAATTGATCTTGTCCTGCAAAGCAAGAATGTTTACTGGAGGATTTTTGGTGCAAACTCAATGGTGCA GGTTAAAGATGATGTGTTGTGCCTTGGATTTGTGGATGGAGGAGTGAATCCTAGGACTTCAATTGTCATTGGAGGCCACCAATTGGAGGACAATCTCCTA CAGTTCGATCTTGCTGCTTCAAGACTGGGCTTCAGCTCTTCCCTGTTGTTTAGACAAACAACTTGTGCCAACTTCAACTTCACCTCTAAGTCTTAG
AA sequence Show only first row Show all	>Potri.006G068900.1 pacid=42768880 polypeptide=Potri.006G068900.1.p locus=Potri.006G068900 ID=Potri.006G068900.1.v4.1 annot-version=v4.1 MALTHNFLLLFCSLFLISSPHSIAQTTFRPKALVLPVSKDPSSLQYLAQINQRTPLVPVEVTLDLGGQYLWVDCQQGYVSSSKKNPSCNTAQCSLAVYRL KTCTVDKKFCVLSPDNTATRTGTSDYLTQDVVSIQSTDGSNPGRVVSVPNFLFSCAPTFILQGLAKGVKGMAGLGRTKISLPSQFSAAFSFPKKFAICLT SSNAKGVVIFGDGPYVLLPHADDLSQSLIYTPLILNPVSTASGYFEGEPSTDYFIGVKSIKINENVVPLNASLLSINREGYGGTKISTVNAYTVMETTIY NAVTDSFVRELAKANVPRVASVAPFGACFNSKNIGSTRVGPAVPQIDLVLQSKNVYWRIFGANSMVQVKDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLL QFDLAASRLGFSSSLLFRQTTCANFNFTSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	0	1
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	2.82	0.9527
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162200 [exp]	3.87	0.9189
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.015G091800 [exp]	4.35	0.8985
					Potri.013G116750 [exp]	4.58	0.9376
					Potri.002G220667 [exp]	5.74	0.9258
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	6.92	0.9230
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.006G215866 [exp]	7.87	0.8767
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	8.12	0.8884
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.001G350400 [exp]	8.94	0.9094
					Potri.008G206866 [exp]	8.94	0.9292

Compare expression of checked genes

Potri.006G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.