Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 369 / 1e-124 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 97 / 1e-21 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 71 / 8e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 68 / 5e-12 RabGAP/TBC domain-containing protein (.1.2) AT5G53570 67 / 8e-12 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 66 / 1e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 66 / 2e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 66 / 2e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 66 / 2e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131300 [exp] 789 / 0 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 400 / 4e-136 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 397 / 6e-135 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 97 / 2e-21 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 72 / 4e-13 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.018G127500 [exp] 71 / 6e-13 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.007G132900 [exp] 70 / 2e-12 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.006G066300 [exp] 69 / 4e-12 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.015G007400 [exp] 68 / 6e-12 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017104 [exp] 373 / 2e-125 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 342 / 1e-113 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 93 / 4e-20 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 88 / 6e-19 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 88 / 2e-18 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10004802 [exp] 73 / 1e-13 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10027697 [exp] 72 / 2e-13 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 71 / 6e-13 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10022356 [exp] 69 / 3e-12 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 68 / 6e-12 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.006G069300.1 pacid=42767230 polypeptide=Potri.006G069300.1.p locus=Potri.006G069300 ID=Potri.006G069300.1.v4.1 annot-version=v4.1 ATGCTTAAGAAGGGCAAGCTCAAGCTCCCTGACAGGCTTGGTATTTTGGTCCCTGGTTTGGACGACAAAGAGGAGGAGAATGGAGGGTCCGAACCGGTTT TCGAGTCCGGTGAGGAGCTTGAGATTATGGAGCCTAATGGGGTTGAGTTAGGCCACAAGGAAAATGAGTATGAATTTGATTTGGGTGTTGATGATAAAGT TGGGGATAAAGTGGATGCTTTTAGGACCCGGAAGAGACCCGATAAAGATGGGCCGGGCCATGTCACGGTTAGGGAGGTTATTGCAGCTGATGAGAAAAGG TCTGATCTTGAATATGAGTTCTCTCAAAAGGAGATAAATTTGGAAAAGGTGAAGAGAATTGCTAGTATGGGGGTTCCTGATGGAGGAGGATTGAGGGCAA CAGCTTGGAAGCTATTGTTGGGTTATTTATCTCCTTCTCATGATGTGTGGGAAAAGGAGTTAACCGAGAACAGACAAAAATATGCTAAGCTAAAAGAGGA GCTTCTGCTGAGTCCTTCAGAGTACACCAGGGTAAAAGCTGATGCAATGATTTCCGCTGAGCTGAGCAGTGAAGGTGATGTTGCTGGACCACTTAAGCGA CAAGGAATTTCTCATGGAGATCATCCCCTGAGTGTTGGTATGGCTAGTGCTTGGCATCACTACTTTAAGCATACAGAGATTGCAGAACAGATTGACCGTG ATTTGCAGCGCACACATCCAGATATGAAATTCTTCTCAGGGGAGTCCTCGTTCAGTAAGAAGAATAGGGAAGCAATGAGGAACATTCTTCTCTTATTTGC AAAGCTAAATCCAGCTATTTGTTATGTACAAGGCATGAATGAGGTCCTGGCACCAATACTCTATGTATTTAGTACTGACACTGATGAGCAGAATGCTGTA AATGCTGAAGCTGATAGCTTTTCTTGTTTTGTTCGACTGCTGAGTGATTCAGTGGATCACTTTTGCCAACAGTTGGATAATAGTCCTGTTGGCATCCTCT CCACTCTTTCCCGCTTGGCAAAATTATTGAAAGAAAATGATGAGGAATTATGGAAGCATCTTGAATTCACTACCAAGGTTAAGCCACAATTCTATGCATT CAGGTGGATCACTTTGCTACTGTCTCAGGAATTCAACTTCCAATCCATTTTAAGAATCTGGGATTCTCTTTTGAGCAATCCTTTTGGGGTTCAGGATATG CTTTTGCGGATCTGTTGTGCAATGCTGTTATGCATGAAAAGCAGGCTATTGCGTGGTGATTTTGTAGCTAACTTGAGGCTTTTACAGCATTACCCTGACA TCAACATCGAATACCTTCTCCAGGTAGCACAGGATCTAAGTGCCGATACATCATCCTACAGTTTGTCTTTGTAA
AA sequence Show only first row Show all	>Potri.006G069300.1 pacid=42767230 polypeptide=Potri.006G069300.1.p locus=Potri.006G069300 ID=Potri.006G069300.1.v4.1 annot-version=v4.1 MLKKGKLKLPDRLGILVPGLDDKEEENGGSEPVFESGEELEIMEPNGVELGHKENEYEFDLGVDDKVGDKVDAFRTRKRPDKDGPGHVTVREVIAADEKR SDLEYEFSQKEINLEKVKRIASMGVPDGGGLRATAWKLLLGYLSPSHDVWEKELTENRQKYAKLKEELLLSPSEYTRVKADAMISAELSSEGDVAGPLKR QGISHGDHPLSVGMASAWHHYFKHTEIAEQIDRDLQRTHPDMKFFSGESSFSKKNREAMRNILLLFAKLNPAICYVQGMNEVLAPILYVFSTDTDEQNAV NAEADSFSCFVRLLSDSVDHFCQQLDNSPVGILSTLSRLAKLLKENDEELWKHLEFTTKVKPQFYAFRWITLLLSQEFNFQSILRIWDSLLSNPFGVQDM LLRICCAMLLCMKSRLLRGDFVANLRLLQHYPDINIEYLLQVAQDLSADTSSYSLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	0	1
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.010G060700 [exp]	2.00	0.8562
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	2.00	0.8580	Pt-TAN1.2
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	5.29	0.8405
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	5.74	0.8511	Pt-BRI1.2
AT4G38640			Plasma-membrane choline transp...		Potri.009G132900 [exp]	7.00	0.8258
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	9.16	0.8300	ATCSLE1.1
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	9.21	0.8368	APK1.1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093500 [exp]	9.48	0.7828
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.008G085500 [exp]	11.22	0.8185
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.012G142700 [exp]	11.35	0.7840

Compare expression of checked genes

Potri.006G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.