Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20150 359 / 8e-126 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 352 / 3e-122 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G15330 198 / 1e-61 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G45130 181 / 6e-56 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT4G22990 41 / 0.0008 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131500 [exp] 440 / 8e-157 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G253400 [exp] 322 / 1e-110 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 321 / 4e-110 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.002G143900 [exp] 219 / 2e-70 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 217 / 1e-69 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.001G193200 [exp] 172 / 5e-53 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.017G086600 [exp] 172 / 2e-51 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G135950 [exp] 102 / 7e-27 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.010G069000 [exp] 46 / 3e-05 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043272 [exp] 370 / 1e-129 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 370 / 2e-129 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 343 / 2e-116 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 315 / 6e-108 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 314 / 2e-107 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10009314 [exp] 48 / 6e-06 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10021164 [exp] 44 / 0.0001 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 44 / 0.0002 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.006G069500.1 pacid=42766989 polypeptide=Potri.006G069500.1.p locus=Potri.006G069500 ID=Potri.006G069500.1.v4.1 annot-version=v4.1 ATGAAATTCGGAAAAAGCTTAAGCAATCAGATTGAAGAAACATTACCTGAATGGAGAGACAAGTTTCTCTCTTACAAAGAACTCAAGAAAAGATTGAAAC TCATCGAACCAAACAACAACACAAGCAAGAACAATGGAGAATCCCGGCCAATGAAAAAACCGAGATTGTCTGCCGCCTCTGCTGATGCTGGTGGTGGTGA TTGTACGGACGGTGGTGGAGCAGATAGCAAGGAAGTAAGTATGACAAGGGAAGAGATTGATTTTATTAAGCTGTTAGAAGACGAGCTCGAGAAGTTTAAC AGTTTTTTTGTTGAGAAAGAAGAAGAGTACATCATCAGATTAAAGGAGTTGCAAGATAGTGTGGCAAAGGCAAAGAATTCCAATGAAGAGATGATAATAA TTAGGAAGGAGATCGTAGATTTCCATGGAGAGATGGTTTTGCTGGAGAATTATAGTGCTCTGAACTATACAGGATTGGTAAAAATACTGAAGAAATATGA TAAAAGAACTGGTGCTCTCATTCGCTTGCCCTTCATCCAGAGGGTTTTGCGACAGCCTTTCTTCACCACTGATTTGCTCTACAAGCTTGTTAAAGAATGC GAGGCAATGCTAGACCGCCTTTTCCCATTGAGAGAACCACCATCTTCTTTTGAAGCAGCCGACGGGGATGACTCATGTGATCCTTCAACCTCTTCGACTA CCACAAATGATAGTACAATCAGTTTCCCCAAGGAACTTGCAGAGATTGAACTTATGGAGAGTTCATATATGAAGAGCACAATATCAGCATTGCGGGTTCT GAAGGAAATTCGAAGCAAAAGTTCCACTGTTAGTGTTTTTTCATTGCCACCACTTCAAATGAGTGGTTTGGAAGATACTTGGAAAAAGGTTCCTATACTG GAACAAGAAGCCAAGTAG
AA sequence Show only first row Show all	>Potri.006G069500.1 pacid=42766989 polypeptide=Potri.006G069500.1.p locus=Potri.006G069500 ID=Potri.006G069500.1.v4.1 annot-version=v4.1 MKFGKSLSNQIEETLPEWRDKFLSYKELKKRLKLIEPNNNTSKNNGESRPMKKPRLSAASADAGGGDCTDGGGADSKEVSMTREEIDFIKLLEDELEKFN SFFVEKEEEYIIRLKELQDSVAKAKNSNEEMIIIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRVLRQPFFTTDLLYKLVKEC EAMLDRLFPLREPPSSFEAADGDDSCDPSTSSTTTNDSTISFPKELAEIELMESSYMKSTISALRVLKEIRSKSSTVSVFSLPPLQMSGLEDTWKKVPIL EQEAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.006G069500 [exp]	0	1
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.014G116800 [exp]	1.41	0.8745	GOLS2.1
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Potri.013G064600 [exp]	4.24	0.8147	SDG935
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	5.74	0.7941
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.001G115000 [exp]	6.00	0.7582
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.010G055000 [exp]	6.63	0.7816
AT5G58110			chaperone binding;ATPase activ...		Potri.018G151500 [exp]	7.00	0.7415
AT4G24290			MAC/Perforin domain-containing...		Potri.003G006500 [exp]	15.81	0.7614
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.012G038300 [exp]	16.73	0.6876	Pt-EPR1.2
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	20.78	0.7405
AT5G22090			Protein of unknown function (D...		Potri.004G144000 [exp]	22.62	0.6602

Compare expression of checked genes

Potri.006G069500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.