Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) AT5G64120 363 / 6e-126 Peroxidase superfamily protein (.1) AT5G39580 359 / 2e-124 Peroxidase superfamily protein (.1.2) AT5G64110 335 / 1e-114 Peroxidase superfamily protein (.1) AT5G64100 323 / 3e-110 Peroxidase superfamily protein (.1) AT4G25980 323 / 9e-110 Peroxidase superfamily protein (.1) AT1G77100 286 / 2e-95 Peroxidase superfamily protein (.1) AT5G17820 281 / 4e-94 Peroxidase superfamily protein (.1) AT1G05260 276 / 1e-91 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 275 / 2e-91 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131600 [exp] 613 / 0 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 412 / 2e-145 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 285 / 4e-95 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 285 / 5e-95 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 283 / 2e-94 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 283 / 3e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 283 / 3e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 283 / 3e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 283 / 3e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015555 [exp] 479 / 2e-171 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10007051 [exp] 389 / 3e-136 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 380 / 1e-132 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10012684 [exp] 375 / 1e-130 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 357 / 2e-123 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10025535 [exp] 292 / 2e-96 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10026748 [exp] 287 / 7e-96 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10039680 [exp] 276 / 9e-92 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 276 / 2e-91 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 275 / 3e-91 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.006G069600.1 pacid=42767513 polypeptide=Potri.006G069600.1.p locus=Potri.006G069600 ID=Potri.006G069600.1.v4.1 annot-version=v4.1 ATGGAAGGATTATGGCTGGTTGTTTTGGTGATTTTTGTAATGGCTTTGTCTGTGCAAAGCCAATTGAAAACAGGGTTTTATTCTACTTCATGTTCGAAAG CTGAGGCCATTGTTAGGTCCACTGTTGAATCTTACTTCAAAAAAGATCCCACCATTGCAGCTGGATTGCTCAGGCTTCATTTTCATGACTGCTTTGTCCA GGGCTGCGATGGTTCAGTATTGATTGCGGGGTCTTCTGCCGAGAGAAATGCCTTGCCGAATCTTGGATTAAGAGGTTTTGAAGTAATTGATGATGCTAAA TCACAGATTGAGGCCTTATGCCCTGGGGTGGTCTCATGTGCTGACATACTAGCTTTGGCTGCTCGTGATGCTGTGGACTTGAGTGATGGTCCAAGTTGGT CAGTCCCAACAGGTAGAAGAGATGGCAGGGTCTCTTTATCATCCCAGGCCTCAAATTTACCTTCACCTCTAGACACCGTAGCTGCCCAGAAGCAAAAATT TTCTGATAAAGGCCTGGACGATCACGATCTCGTAACCCTCGTCGGGGCACATACCATTGGCCAAACACACTGTCAATTCATTCGATATCGCCTATACAAC TTCACAACAACAGGCAACTCAGACCCGACAATAAACCAATCATTCCTATCACAACTTCAAGCTCTATGTCCCAAAAATGGCGATGGCACAAAACCAGTTC CATTAGACAAAGATAGCCAGACAGATTTTGATACAAGCTTCTTCAAGAACGTACGTGATGGCAATGGAGTTTTGGAGTCGGACCAGAGACTTTGGGATGA CGCTGCAACACGTGATGTTGTGAAAAAATATGCTGGCACCATAAGAGGATTACTGGGACTTAGGTTTGATATTGAGTTTAGGCAAGCTATGGTTAAAATG AGTAGCATTGAAGTGAAAACTGGGACTGATGGAGAGATAAGAAAAGTCTGTTCAAAGTTCAATTAA
AA sequence Show only first row Show all	>Potri.006G069600.1 pacid=42767513 polypeptide=Potri.006G069600.1.p locus=Potri.006G069600 ID=Potri.006G069600.1.v4.1 annot-version=v4.1 MEGLWLVVLVIFVMALSVQSQLKTGFYSTSCSKAEAIVRSTVESYFKKDPTIAAGLLRLHFHDCFVQGCDGSVLIAGSSAERNALPNLGLRGFEVIDDAK SQIEALCPGVVSCADILALAARDAVDLSDGPSWSVPTGRRDGRVSLSSQASNLPSPLDTVAAQKQKFSDKGLDDHDLVTLVGAHTIGQTHCQFIRYRLYN FTTTGNSDPTINQSFLSQLQALCPKNGDGTKPVPLDKDSQTDFDTSFFKNVRDGNGVLESDQRLWDDAATRDVVKKYAGTIRGLLGLRFDIEFRQAMVKM SSIEVKTGTDGEIRKVCSKFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41480			Peroxidase superfamily protein...		Potri.006G069600 [exp]	0	1
AT5G50710			unknown protein		Potri.012G101800 [exp]	4.24	0.8851
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.007G054200 [exp]	5.56	0.8200	Pt-HLS1.2
AT3G12090		TET6	tetraspanin6 (.1)		Potri.008G041600 [exp]	11.61	0.8698
AT4G27745			Yippee family putative zinc-bi...		Potri.014G101600 [exp]	15.09	0.8808
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G070500 [exp]	20.61	0.8602
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Potri.006G054700 [exp]	22.71	0.8457
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	23.15	0.8658
AT3G24330			O-Glycosyl hydrolases family 1...		Potri.018G072300 [exp]	24.71	0.8438
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183200 [exp]	29.15	0.8490
					Potri.001G386950 [exp]	30.04	0.8115

Compare expression of checked genes

Potri.006G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.