Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 342 / 8e-117 Zinc-binding dehydrogenase family protein (.1) AT5G17000 341 / 1e-116 Zinc-binding dehydrogenase family protein (.1) AT5G16970 338 / 1e-115 AT-AER alkenal reductase (.1) AT3G59845 330 / 4e-112 Zinc-binding dehydrogenase family protein (.1.2) AT5G16960 327 / 5e-111 Zinc-binding dehydrogenase family protein (.1) AT3G03080 326 / 2e-110 Zinc-binding dehydrogenase family protein (.1) AT5G37980 321 / 1e-108 Zinc-binding dehydrogenase family protein (.1) AT1G26320 318 / 2e-107 Zinc-binding dehydrogenase family protein (.1.2) AT5G37940 317 / 5e-107 Zinc-binding dehydrogenase family protein (.1) AT1G65560 317 / 6e-107 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177700 [exp] 333 / 1e-113 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 332 / 5e-113 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 328 / 1e-111 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 328 / 2e-111 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002700 [exp] 325 / 3e-110 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 323 / 2e-109 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143800 [exp] 322 / 5e-109 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 313 / 2e-105 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 314 / 4e-105 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030087 [exp] 410 / 1e-143 AT5G16990 336 / 1e-114 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 349 / 1e-119 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 339 / 1e-115 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 333 / 3e-113 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 328 / 2e-111 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 323 / 2e-109 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 322 / 5e-109 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 321 / 1e-108 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 307 / 3e-103 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 290 / 8e-95 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF16884 [poplar] [flax] ADH_N_2 N-terminal domain of oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.006G070000.8 pacid=42767295 polypeptide=Potri.006G070000.8.p locus=Potri.006G070000 ID=Potri.006G070000.8.v4.1 annot-version=v4.1 ATGGAAGTGAACAACAGGTATATCACAATAACGAAACACATACAGGGTTCGGCAAAGGAGTCTGATTTCGAGCTCAAGGTTGCACCTCTTGGATTATCGG TGGAGCCTGGTTCCAATGACATTATTGTGAAGAATCTGTGTGTGTCAATTGATCCTTACCAGCTTAATCGCATGAAGAGTTACAGCTCCTCACAGAAAAC AGTACAAGCTGCAGATGGTATCTCTCCCGGTCAGCCTATTGATGCTCTTGGAGTAGCCAAGGTTTTGGTTTCTGACAATCCTGAATTTGTGAAAGATGAC TTGGTTGTGGGGTTTGTTCACTGGGGAGAATATAGTGTAGTAAAAGGAGGAGGCATGTTAAGGAAGGTGGACCCAAAAACTGAACTACCGTTATCATATC ATGCTGGAATTCTAGGATTAAGTGGACTAACAGCCTATGCTGGGCTGTTTGAAATATGCAAGCCCAAGAAGGGAGACAAAGTGTTTGTATCTGCTGCTTG TGGATCAGTTGGAAATTTGGTGGGCCAGTATGCAAAACTTTCTGGTTGCTATGTAGTTGGATGTGCTGGTAGCAGAGACAAGGTAGCATTGCTAAAGGAG AAGCTTGGTTTTGATGATGCTTTCAACTACAAGGAAGAAACTGATTTGAATTCCGCTCTCACAAGGTACTTTCCTGATGGGATTGATATATATTTTGACA ATGTTGGAGCTGACATGCTAGAAGCTGCTGTTGCTAATTTGAATCCCTTTGGTAGAGTAGCTGCATGTGGAACAATTGCTGAGTATTCAGAAACTGCAAA ACGAGCAGCACCAAATATGATAGATGTTATATACAAGAGGATTAAAATCCAAGGATTTTTAGCCATGGATCACAAGAGCCTGCATTCAGATTTTCTTTCG ACAACGACTGAATACATTCAAAATGGCAAGATTAAGGTGCAAGAGGACATTTCTATTGGTGTAGAAAGCATCCCCTTAGCTTTCATAGGACTATTCAGAG GTGATAATGTTGGAAAGAAGATTGTTAAAATTGCAGATGAGTGA
AA sequence Show only first row Show all	>Potri.006G070000.8 pacid=42767295 polypeptide=Potri.006G070000.8.p locus=Potri.006G070000 ID=Potri.006G070000.8.v4.1 annot-version=v4.1 MEVNNRYITITKHIQGSAKESDFELKVAPLGLSVEPGSNDIIVKNLCVSIDPYQLNRMKSYSSSQKTVQAADGISPGQPIDALGVAKVLVSDNPEFVKDD LVVGFVHWGEYSVVKGGGMLRKVDPKTELPLSYHAGILGLSGLTAYAGLFEICKPKKGDKVFVSAACGSVGNLVGQYAKLSGCYVVGCAGSRDKVALLKE KLGFDDAFNYKEETDLNSALTRYFPDGIDIYFDNVGADMLEAAVANLNPFGRVAACGTIAEYSETAKRAAPNMIDVIYKRIKIQGFLAMDHKSLHSDFLS TTTEYIQNGKIKVQEDISIGVESIPLAFIGLFRGDNVGKKIVKIADE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.006G070000 [exp]	0	1
AT3G02430			Protein of unknown function (D...		Potri.004G223500 [exp]	1.41	0.9194
AT3G14470			NB-ARC domain-containing disea...		Potri.009G056200 [exp]	4.24	0.8804
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.010G123700 [exp]	4.47	0.9142
AT5G53110			RING/U-box superfamily protein...		Potri.001G091700 [exp]	6.32	0.8795
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Potri.005G144000 [exp]	9.79	0.9094	IFS1.49
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	11.22	0.8867
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	11.66	0.8820
					Potri.012G124832 [exp]	13.85	0.8941
AT3G14280			unknown protein		Potri.003G072400 [exp]	16.49	0.8732
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	20.97	0.8892

Compare expression of checked genes

Potri.006G070000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.