Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06925 216 / 4e-73 ATSPLA2-ALPHA, PLA2-ALPHA PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) AT4G29470 75 / 2e-17 PLA2-DELTA phospholipase A2 delta, Phospholipase A2 family protein (.1) AT2G19690 72 / 9e-17 PLA2-BETA phospholipase A2-beta (.1.2) AT4G29460 73 / 1e-16 PLA2-GAMMA phospholipase A2 gamma, Phospholipase A2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132100 [exp] 247 / 2e-85 AT2G06925 228 / 9e-78 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.012G049101 [exp] 191 / 6e-64 AT2G06925 157 / 4e-51 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.006G149700 [exp] 75 / 1e-17 AT2G19690 153 / 2e-48 phospholipase A2-beta (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011960 [exp] 193 / 9e-64 AT2G06925 204 / 3e-68 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Lus10042892 [exp] 73 / 1e-16 AT4G29460 147 / 2e-45 phospholipase A2 gamma, Phospholipase A2 family protein (.1) Lus10028189 [exp] 71 / 4e-16 AT2G19690 149 / 4e-47 phospholipase A2-beta (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G070400.1 pacid=42767576 polypeptide=Potri.006G070400.1.p locus=Potri.006G070400 ID=Potri.006G070400.1.v4.1 annot-version=v4.1 ATGGCTAAGGAGCACCAGTTCTATTCATTGAAGTTAGCTCTTCTCGTTTCTTGTTCCCTACTTGTCCTTCCCTTTTCATCTTTTTATGTCCAAGCACTCA ACATTGGAGTTCAAACAGCTGATTCTGCTATCTCCCTGGGCAAAGATTGTAGTAGGAAATGTGAGTCAGAGTTCTGCTCAGTGCCTCCATTTTTGAGATA TGGCAAGTATTGTGGGCTTCTATACAGTGGATGCCCAGGAGAGAAGCCTTGTGATGGCCTTGATGCTTGTTGCATGAAGCATGATGCCTGTATCCAATCA AAGAACAATAGCTATCTAAGTCAAGAGTGTAGCCAAAACTTCATCAGTTGTATGAGCAATTTCAAAACAGGTGCTCGGACGTTCAAGGGAAACAAATGCA GGGCTGATGAAGTTATTCATGTTATATCTGTAGTCATGGAAGCTGCTTTGCTTGCCGGAAGAGCACTTCATAAGCCATAA
AA sequence Show only first row Show all	>Potri.006G070400.1 pacid=42767576 polypeptide=Potri.006G070400.1.p locus=Potri.006G070400 ID=Potri.006G070400.1.v4.1 annot-version=v4.1 MAKEHQFYSLKLALLVSCSLLVLPFSSFYVQALNIGVQTADSAISLGKDCSRKCESEFCSVPPFLRYGKYCGLLYSGCPGEKPCDGLDACCMKHDACIQS KNNSYLSQECSQNFISCMSNFKTGARTFKGNKCRADEVIHVISVVMEAALLAGRALHKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.006G070400 [exp]	0	1
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	2.00	0.7014	TIP4.1
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117700 [exp]	6.24	0.6834	CYP72D2-1
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Potri.001G112900 [exp]	6.48	0.5854
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Potri.006G194200 [exp]	8.94	0.5976
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Potri.009G112553 [exp]	18.02	0.6053
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	22.84	0.6344
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	31.74	0.6049
					Potri.005G043600 [exp]	36.98	0.5552
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.005G179300 [exp]	42.24	0.5935	ALDH3.3
AT1G71820		SEC6	SEC6 (.1.2)		Potri.013G117400 [exp]	47.18	0.5512

Compare expression of checked genes

Potri.006G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.