Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10700 556 / 0 GalAK galacturonic acid kinase (.1) AT3G06580 58 / 8e-09 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102800 [exp] 53 / 2e-07 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.010G148100 [exp] 52 / 5e-07 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025946 [exp] 550 / 0 AT3G10700 532 / 0.0 galacturonic acid kinase (.1) Lus10014251 [exp] 537 / 0 AT3G10700 510 / 9e-180 galacturonic acid kinase (.1) Lus10016320 [exp] 53 / 2e-07 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 51 / 1e-06 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 46 / 4e-05 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10037789 [exp] 45 / 0.0001 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0677 [poplar] [flax] GHMP_C PF08544 [poplar] [flax] GHMP_kinases_C GHMP kinases C terminal CL0329 [poplar] [flax] S5 PF10509 [poplar] [flax] GalKase_gal_bdg Galactokinase galactose-binding signature
Representative CDS sequence Show only first row Show all	>Potri.006G070500.1 pacid=42769024 polypeptide=Potri.006G070500.1.p locus=Potri.006G070500 ID=Potri.006G070500.1.v4.1 annot-version=v4.1 ATGAGTGGGGTTTCTTGGCCTATAGAAAATGAGCTAAACGAAATAAAGGAGATTGTTTCTGCAATGGCTGGAAGAGGTCCTGAAGAAGTGAGAGTTGTGG TCTCTCCTTATCGGATTTGTCCACTTGGTGCTCACATTGATCATCAGGGTGGAACTGTTTCGGCTATGACAATAAATAAAGGAATTCTTCTGGGGTTTAT TCCTTCTGATGATACTGAGGTTATACTGCGTTCAGGACAGTTCAAAGGAGAAGTAAGGTTCAGCGTTGATGAAGTTCAGCAACCCAGACCCATTAGGAAA AAAGGAGAGTCCCATGCAACTGATTCCCCAAAACTACAGGAAGCAGGTAACTGGGGAAATTTTGCAAGAGGAGCTGTCTATGCACTACAGAGCAGGGGGA TCTCTCTTACTCAGGGCATCACAGGATACATATGTGGTTCTGAAGGTCTTGACAGTTCAGGCCTTAGCTCTTCTGCCGCTGCTGGAGTTGCATACCTGCT GGCTTTTGAAACTGCAAATAACTTGACCATGACTCCTACTGAAAATATTGAATATGATAGGTTGATTGAAAATGAATATTTGGGTCTGAAAAATGGCATA TTGGATCAATCGGCAATATTGCTTTCAAGCCATGGTTTCCTTACACACATGAACTGCAAGACTAAAGAACACAAGCTTGTTCCTTCACCGAAGCAAAGCA ACTTCCAGAAATCCTACAAAATATTATTGGCATTCTCAGGCTTGAGGAATGCCCTGACTAACAGCCCTGGATATAATCTTCGTGTGGTAGAGTGTCATGA GGCTGCTAGAATTCTTCTCAAAGCCTCTGGAAATGACAACCTGGAGCCTCGTCTATGCAATGTTGATCCAGAGGCATATGAGACTCACAAGGGCTTATTA GAACCCAATCTAGCGAAAAGGGCAGAACACTATTTCTCAGAGAATATGCGGGTTATGAAAGGTCTTGAAGCTTGGGCTTCTGGCAACTTGGAAGAATTTG GAAAGCTCATCTCAGCCTCTGGTTTAAGTTCTATTCAGAACTATGAATGTGGTTGTGAGCCACTGCAACAACTGTATGAGATTCTTCTGAGGGCACCTGG TGTATATGGAACCCGTTTCAGTGGTGCTGGATTTAGAGGTTGTTGTCTTGCATTTGTAGATGCTAATCTAGCAGAAGAAGCTGTTACTTTTGTCACGGAA GAATATCAGAAAGCCCAACCTAAACATGCTAGTCAAATCTTCACAGAGAAGGCTGCATTGATATGCGACGCAGGTGACTGTGCTCGCGTAATATGA
AA sequence Show only first row Show all	>Potri.006G070500.1 pacid=42769024 polypeptide=Potri.006G070500.1.p locus=Potri.006G070500 ID=Potri.006G070500.1.v4.1 annot-version=v4.1 MSGVSWPIENELNEIKEIVSAMAGRGPEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFIPSDDTEVILRSGQFKGEVRFSVDEVQQPRPIRK KGESHATDSPKLQEAGNWGNFARGAVYALQSRGISLTQGITGYICGSEGLDSSGLSSSAAAGVAYLLAFETANNLTMTPTENIEYDRLIENEYLGLKNGI LDQSAILLSSHGFLTHMNCKTKEHKLVPSPKQSNFQKSYKILLAFSGLRNALTNSPGYNLRVVECHEAARILLKASGNDNLEPRLCNVDPEAYETHKGLL EPNLAKRAEHYFSENMRVMKGLEAWASGNLEEFGKLISASGLSSIQNYECGCEPLQQLYEILLRAPGVYGTRFSGAGFRGCCLAFVDANLAEEAVTFVTE EYQKAQPKHASQIFTEKAALICDAGDCARVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10700		GalAK	galacturonic acid kinase (.1)		Potri.006G070500 [exp]	0	1
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.013G155300 [exp]	1.00	0.9655
AT1G26300			BSD domain-containing protein ...		Potri.010G137900 [exp]	1.73	0.9604
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	2.82	0.9632	Pt-FLA11.2
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.008G100000 [exp]	3.46	0.9586	ARF1.3
AT5G11640			Thioredoxin superfamily protei...		Potri.006G237600 [exp]	5.91	0.9531
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	7.41	0.9586	UXS1.1
AT5G01010			unknown protein		Potri.016G143700 [exp]	8.06	0.9211
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.003G202900 [exp]	8.48	0.9178	Pt-ABI8.1
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	8.71	0.9419
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	8.94	0.9526	COPE2.1

Compare expression of checked genes

Potri.006G070500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.