Plant FIBer expression Database

Potri.006G070700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40080 150 / 4e-49 Mitochondrial ribosomal protein L27 (.1)
AT4G09012 140 / 4e-44 Mitochondrial ribosomal protein L27 (.1)
AT5G39800 134 / 1e-42 Mitochondrial ribosomal protein L27 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G161600
[exp]
177 / 7e-60 AT5G40080 144 / 8e-47 Mitochondrial ribosomal protein L27 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003002
[exp]
171 / 4e-57 AT5G40080 147 / 4e-48 Mitochondrial ribosomal protein L27 (.1)
Lus10011032
[exp]
168 / 4e-56 AT5G40080 146 / 2e-47 Mitochondrial ribosomal protein L27 (.1)
Lus10034241
[exp]
163 / 3e-54 AT5G40080 137 / 5e-44 Mitochondrial ribosomal protein L27 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09809 MRP-L27 Mitochondrial ribosomal protein L27
Representative CDS sequence
>Potri.006G070700.2 pacid=42767862 polypeptide=Potri.006G070700.2.p locus=Potri.006G070700 ID=Potri.006G070700.2.v4.1 annot-version=v4.1
ATGCCGTTGGGATTGATAACCGGGATAGGGAGGGCAATGAGGAGGAAGCGAACGTCGTCGTTGGACATTCTCTCGTCAAAACGTGCTCCCCGGACTTACT
ACAAGGGAAAGAATTGCAAGCCCACTGGTTTTCACACTCGTAAAGGTGGGTATGTTGTTGTACCGGAAAAACTGCCCAACTATGTAGTCCCTGATTTGAC
TGACTTCAAGCTCAAACCATACGTGTCTCAATGTCCAACGGAGGTTAAGACAACTGAAGCATCTGAACTTGCTAAGTAG
AA sequence
>Potri.006G070700.2 pacid=42767862 polypeptide=Potri.006G070700.2.p locus=Potri.006G070700 ID=Potri.006G070700.2.v4.1 annot-version=v4.1
MPLGLITGIGRAMRRKRTSSLDILSSKRAPRTYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTDFKLKPYVSQCPTEVKTTEASELAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G40080 Mitochondrial ribosomal protei... Potri.006G070700
[exp]
0 1
AT3G06700 Ribosomal L29e protein family ... Potri.010G142001
[exp]
7.74 0.8801
AT4G17520 Hyaluronan / mRNA binding fami... Potri.001G153000
[exp]
8.12 0.8724
AT5G24840 tRNA (guanine-N-7) methyltrans... Potri.006G277100
[exp]
8.48 0.8443
AT1G33140 PGY2 PIGGYBACK2, Ribosomal protein ... Potri.001G454000
[exp]
11.91 0.8942
AT2G41840 Ribosomal protein S5 family pr... Potri.016G055000
[exp]
15.16 0.8843 Pt-RPS2.3
AT5G08180 Ribosomal protein L7Ae/L30e/S1... Potri.008G110100
[exp]
16.49 0.8765
AT5G56670 Ribosomal protein S30 family p... Potri.014G147200
[exp]
19.36 0.8728
AT3G49010 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast ... Potri.013G027600
[exp]
21.16 0.8687 ATBBC1.1
AT5G52650 RNA binding Plectin/S10 domain... Potri.013G027900
[exp]
24.14 0.8629
AT3G04840 Ribosomal protein S3Ae (.1) Potri.010G083200
[exp]
31.08 0.8608 RS3.1

Potri.006G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.