Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39930 1213 / 0 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 590 / 0 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 322 / 1e-96 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT5G04360 82 / 1e-15 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1) AT5G03650 74 / 2e-13 SBE2.2 starch branching enzyme 2.2 (.1) AT3G20440 69 / 1e-11 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT2G36390 69 / 1e-11 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132500 [exp] 1462 / 0 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 578 / 0 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.002G219900 [exp] 328 / 5e-99 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Potri.010G229300 [exp] 87 / 4e-17 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1) Potri.001G359200 [exp] 74 / 4e-13 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G115100 [exp] 73 / 7e-13 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.005G251000 [exp] 52 / 2e-06 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021586 [exp] 1287 / 0 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 777 / 0 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 505 / 5e-167 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10017149 [exp] 325 / 2e-106 AT2G39930 296 / 3e-96 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10027999 [exp] 317 / 3e-95 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10000661 [exp] 310 / 8e-93 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10000912 [exp] 72 / 1e-12 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10038675 [exp] 71 / 3e-12 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10023878 [exp] 71 / 5e-12 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014382 [exp] 70 / 6e-12 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Potri.006G070800.2 pacid=42767273 polypeptide=Potri.006G070800.2.p locus=Potri.006G070800 ID=Potri.006G070800.2.v4.1 annot-version=v4.1 ATGTTTGAGATCAGATATATGACATTCTGTGTCCCCATCAAACAAACACACACCGCTTACCATCACCAAAATGTACCACTTCTTGCCACTCATGATCATG TACCAGTAATTAGCAGCAACAGCTCTCTATTCCCCCTCAAACTACAAAACATGAACTTAGTTCACTCTCCTTCACACTCACTACAACTCCCCAAATTCAT TTCCCATTTCCAAAATACCCCAAAATTCTATCCTCCAAAAAGAGTTACCACTTCCAATTTAGAAACAATTGGCAGTAACATTTTTAGTAATTCAACAGCA TTGATTCCCATTAAAGCAGCAAGTGAAGGAGTGGATACAGCTGTAGTAGTGGTGGAGGAGGAGGAGCCTAAATTGAAAAAAATTCAGGTGTTTGAAGGCC ATCCTGCACCATTTGGTGCAACAGTTCGTGATGGTGGTGTCAATTTTGCTATATTTTCTGCCGACGCAGTTTCTGCTACTCTTTGCTTGATTTCACTCTC TGATTTGCCTGAGAATAGAGTGACTGAGCAGATTTTTCTTGATCCTTTGACCAACAAGACTGGAGATGTTTGGCATGTGCTTTTGAAAGGAGATTTTAAA GATATGCTATATGGGTACAAGTTTGATGGGAACTTTTCTCCTGAAGTAGGACTTTACTATGATCCTTCTAAGATCGTATTGGATCCTTATGCAAAATCAG TTATTAGCAGAGGGGAGTTTGGTGTTTTGGGGCATGATGATAATCGATGGCCTCAAATGGCCTGCATGATACCCACTGCAGAAAACAAGTTTGATTGGGA GGGAGATTCACCATTAAAGCATCCACAAAGAGATCTAATAATATATGAAATGCATGTTCGAGGGTTTACACAGCATGAATCAAGCAGGACTGAATTCCCT GGTACATACCTTGGTGTAGTGGAGAAGCTTGATCATTTGAAGGAACTTGGTGTCAACTGCATAGAGTTAATGCCATGCCATGAATTCAATGAGCTTGAGT ACTACAGTTACAATTCTGTCTTGGGTGACTACAAGGTTAATTTTTGGGGATATTCTACCGTCAATTACTTTTCGCCTATGACAAGATACTCATCTGCTGG CACAAGGAACTGTGGCCGAGATGCAATTAATGAATTCAAGCTTCTTGTTAGAGAAGCACATAAACGAGGAATTGAGGTGTTCATGGACGTTGTTTTCAAT CACACAGCGGAAGGAAATGAGAAAGGTCCCATTCTGTCTTTCAGAGGAGTTGATAACAGTATCTATTACATGCTTGCTCCTAAGGGAGAGTTCTATAATT ATTCAGGTTGTGGCAACACATTCAATTGCAACCATCCTATCGTGCGTCAATTTATATTGGACTGCTTAAGATATTGGGTGACAGAGATGCACGTAGATGG CTTCCGCTTTGACCTTGCTTCTATTATGACTAGAAGTAGTAGTCTCTGGGATGCAGTTAATGTATTCGGGAGTCCCATAGAAGGTGACTTGCTGACAACT GGCACTCCTCTCAGCAGCCCTCCATTGATTGACATGATGAGTAATGATCCCATACTCCGTGATGTTAAGCTTATAGCTGAAGCATGGGATGCGGGAGGAT TGTATCAAGTTGGGATGTTTCCCCATTGGCGTATTTGGTCAGAATGGAATGGGAAGTATCGAGACATTGTGCGGCAGTTCGTTAAGGGGACAGATGGTTT TTCTGGGGCTTTTGCTGAATGCCTCTGTGGGAGCCCGAATTTATACCAGGAAGGAGGAAGGAAACCATGGAACAGCATCAACTTTGTATGTGCACATGAT GGTTTTACTTTGGCTGATTTAGTGACATATAACAAGAAGCATAACTTGGCAAATGGCGAAGACAACAATGATGGAGAAAATCATAACAATAGCTGGAATT GTGGACAGGAGGGTGAATTTGCCAGCATTTCAGTGAAGAAATTGCGAAAACGACAAATGAGAAATTTCTTCCTGTGTCTCATGGTTTCACAAGGTGTTCC AATGATATACATGGGTGATGAATATGGTCACACAAAAGGGGGAAACAACAATACATATTGCCATGATAACCATATTAACTACTTCCGCTGGGATAAGAAG GAAGAATCCTCATCAGACTTCTTTAGATTTTGCCGCCTCATGACCAAGTTCCGCCATGAATGTGAGTCCCTTGGCTTGAATGACTTCCCAAAAGCAGAGA GGCTGCAATGGCATGGTCATGATCCTGGAACACCAGATTGGTCAGAAACAAGCCGTTTTGTGGCCTTTACACTGATTGACTCGGTGAAGGGCGAGATCTA CATCGCCTTCAATGCTAGCCATTTGGCAGTTACCATTACACTGCCAGAACGGCCAGGATACAGATGGGAGCCCCTGGTAGACTCTGGCAAGCCTGCACCG TTTGATTTCCTTTCTAGTGACATCCCAGAAAGAGACCTCGCAATTAAACAGTATTCTCACTTCCTTGAGGCCAATCTATACCCTATGCTTAGTTATACTT CCATCATCCTCGTACTCTCTCCCAACGACAATGCTTAA
AA sequence Show only first row Show all	>Potri.006G070800.2 pacid=42767273 polypeptide=Potri.006G070800.2.p locus=Potri.006G070800 ID=Potri.006G070800.2.v4.1 annot-version=v4.1 MFEIRYMTFCVPIKQTHTAYHHQNVPLLATHDHVPVISSNSSLFPLKLQNMNLVHSPSHSLQLPKFISHFQNTPKFYPPKRVTTSNLETIGSNIFSNSTA LIPIKAASEGVDTAVVVVEEEEPKLKKIQVFEGHPAPFGATVRDGGVNFAIFSADAVSATLCLISLSDLPENRVTEQIFLDPLTNKTGDVWHVLLKGDFK DMLYGYKFDGNFSPEVGLYYDPSKIVLDPYAKSVISRGEFGVLGHDDNRWPQMACMIPTAENKFDWEGDSPLKHPQRDLIIYEMHVRGFTQHESSRTEFP GTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNSVLGDYKVNFWGYSTVNYFSPMTRYSSAGTRNCGRDAINEFKLLVREAHKRGIEVFMDVVFN HTAEGNEKGPILSFRGVDNSIYYMLAPKGEFYNYSGCGNTFNCNHPIVRQFILDCLRYWVTEMHVDGFRFDLASIMTRSSSLWDAVNVFGSPIEGDLLTT GTPLSSPPLIDMMSNDPILRDVKLIAEAWDAGGLYQVGMFPHWRIWSEWNGKYRDIVRQFVKGTDGFSGAFAECLCGSPNLYQEGGRKPWNSINFVCAHD GFTLADLVTYNKKHNLANGEDNNDGENHNNSWNCGQEGEFASISVKKLRKRQMRNFFLCLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNHINYFRWDKK EESSSDFFRFCRLMTKFRHECESLGLNDFPKAERLQWHGHDPGTPDWSETSRFVAFTLIDSVKGEIYIAFNASHLAVTITLPERPGYRWEPLVDSGKPAP FDFLSSDIPERDLAIKQYSHFLEANLYPMLSYTSIILVLSPNDNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.006G070800 [exp]	0	1
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.010G128001 [exp]	10.81	0.7518
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	12.96	0.7630
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	13.67	0.7373
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	15.00	0.7637	ATRH1.1
AT1G05790			lipase class 3 family protein ...		Potri.002G231501 [exp]	18.70	0.7856
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.010G224700 [exp]	22.64	0.6967
AT3G56160			Sodium Bile acid symporter fam...		Potri.008G021600 [exp]	25.92	0.7519
AT4G24620		PGI1	phosphoglucose isomerase 1 (.1...		Potri.002G104000 [exp]	27.92	0.6780
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Potri.009G120600 [exp]	28.72	0.7757
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.001G033800 [exp]	32.86	0.7737

Compare expression of checked genes

Potri.006G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.