Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56140 334 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 330 / 2e-103 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 324 / 5e-101 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 314 / 8e-98 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G70520 300 / 3e-95 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G16670 291 / 3e-95 Protein kinase superfamily protein (.1) AT4G00960 286 / 2e-93 Protein kinase superfamily protein (.1) AT4G21390 296 / 3e-92 B120 S-locus lectin protein kinase family protein (.1) AT4G23180 292 / 3e-92 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT3G09010 283 / 4e-92 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132900 [exp] 693 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G067900 [exp] 338 / 2e-106 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G276600 [exp] 327 / 9e-106 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G109700 [exp] 317 / 3e-105 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G132300 [exp] 315 / 4e-104 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2) Potri.003G148000 [exp] 330 / 2e-103 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G082900 [exp] 328 / 6e-103 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.017G141400 [exp] 317 / 5e-102 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 315 / 2e-100 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010927 [exp] 565 / 0 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031401 [exp] 550 / 0 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020688 [exp] 546 / 0 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10003711 [exp] 325 / 2e-108 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10001595 [exp] 325 / 4e-108 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031199 [exp] 328 / 1e-102 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010960 [exp] 305 / 8e-98 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10011193 [exp] 296 / 3e-97 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10042460 [exp] 296 / 3e-97 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10018481 [exp] 296 / 3e-96 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G071300.2 pacid=42769378 polypeptide=Potri.006G071300.2.p locus=Potri.006G071300 ID=Potri.006G071300.2.v4.1 annot-version=v4.1 ATGTGTTTTGACCATAAATTTTCAGATAGAAGTAGGCCTTCTAATCCATTATCGAATGCAGTGACTCCTCCAGCACCCAACGCGCTACATGGACAGAGCC CCTCATCAGGGAATTCTTCAACCTTGTTATTTGTCATTGGAGGGATGACTGTGCTCATAATATTGTTGACCCTGGTATTGTACTTCTGGAAATTCAACAA GCCAGAAAAATTGAAGAAATTCCTGAAGAAAAATAGAAGTCTGACAGAAACCAACGATTTCTGGAGTGGCAATCTTCAAACAATAAACTATTTCGACTTT CAGACATTGAAGAAAGCAACTAAGGATTTTCATCCTGCTAATCTTCTTGGAAGAGGTGGATTCGGGCCTGTCTATCGGGGGAAGTTGCATGATGGTAGAC TGGTTGCGGTAAAAAAATTGTCTCTTGACAAATCTCAGCAAGGAGAATCAGAATTTCTTTCGGAGGTGAAGATGATTACGAGCATCCAACAGAAGAACTT GGTTCGACTTCTAGGATGCTGCTCAGATGGTCCACAAAGGTTACTTGTGTATGAATACATGAAGAATAGAAGCTTGGACCTCATAGTACACGGAAATAGT GATAAATTCCTGGACTGGAACACCAGATTCCAAATAATTTTAGGCATTGCTCGAGGACTGCAATATCTACATGAGGATTCACACCTCAGAATTGTTCACA GAGATATCAAAGCAAGCAACATTCTTCTTGACGATAAGTTCCAGCCTAGGATTAGTGATTTTGGGCTGGCTAGGTTCTTCCCTGAAGATCAAGCATATCT CAGCACTGCATTCGCCGGAACTTTAGGCTATACAGCTCCTGAGTATGCCATCAAAGGAGAATTGTCCGAAAAAGCAGACATATATAGCTTTGGAGTGCTT GTGCTTGAAATTATCAGCAGCAGGAAAAACACAGATCTTAGTTTACCATCAGAAATGCAATACCTTCCTGAATATGCATGGAAATTATATGAGAGGTCAA GAGTGATGGATCTGGTAGATCCGAAATTGCTAGAACATGGAATTGTGGAGAAAGATGTCTTGCAAGTAATCCACGTAGCTTTCTTATGCCTTCAGCCTCT TGCTAACCTGAGACCTCCCATGTCAAGAATTGTTGCCCAGTTAACATGCAAAGTTGAAATGGTTGGAACACCTATGAGGCCAGTTTTCTTGCAAAGAAGC CGTAAAAAGGATGACAACCTCTCTTGGGATACCATATCTGAGGCTTTTCTTTCTCCTCTGTGGACCGAGTCCCCTTCGTTGCCTGGGCCACAAAATTGA
AA sequence Show only first row Show all	>Potri.006G071300.2 pacid=42769378 polypeptide=Potri.006G071300.2.p locus=Potri.006G071300 ID=Potri.006G071300.2.v4.1 annot-version=v4.1 MCFDHKFSDRSRPSNPLSNAVTPPAPNALHGQSPSSGNSSTLLFVIGGMTVLIILLTLVLYFWKFNKPEKLKKFLKKNRSLTETNDFWSGNLQTINYFDF QTLKKATKDFHPANLLGRGGFGPVYRGKLHDGRLVAVKKLSLDKSQQGESEFLSEVKMITSIQQKNLVRLLGCCSDGPQRLLVYEYMKNRSLDLIVHGNS DKFLDWNTRFQIILGIARGLQYLHEDSHLRIVHRDIKASNILLDDKFQPRISDFGLARFFPEDQAYLSTAFAGTLGYTAPEYAIKGELSEKADIYSFGVL VLEIISSRKNTDLSLPSEMQYLPEYAWKLYERSRVMDLVDPKLLEHGIVEKDVLQVIHVAFLCLQPLANLRPPMSRIVAQLTCKVEMVGTPMRPVFLQRS RKKDDNLSWDTISEAFLSPLWTESPSLPGPQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56140			Leucine-rich repeat transmembr...		Potri.006G071300 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.013G105100 [exp]	9.69	0.9695
					Potri.018G047201 [exp]	9.79	0.9776
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212700 [exp]	15.49	0.9759	Pt-BETV1.5
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213669 [exp]	18.57	0.9757
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	22.36	0.9753
					Potri.001G307100 [exp]	24.89	0.9752
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.011G064900 [exp]	27.49	0.9751
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.013G126100 [exp]	28.49	0.9750
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213446 [exp]	31.11	0.9750
					Potri.007G106900 [exp]	32.72	0.9750

Compare expression of checked genes

Potri.006G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.