Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20590 632 / 0 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G12060 417 / 3e-141 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 416 / 5e-141 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G62390 412 / 4e-140 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G06700 415 / 1e-139 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT5G49340 371 / 2e-124 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G19160 331 / 7e-109 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 330 / 2e-108 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 290 / 3e-94 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT1G48880 292 / 5e-94 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133000 [exp] 903 / 0 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 422 / 7e-143 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.010G043300 [exp] 415 / 2e-140 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 417 / 6e-140 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 411 / 5e-138 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 399 / 3e-135 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 399 / 5e-135 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.001G010900 [exp] 391 / 6e-131 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G203900 [exp] 328 / 6e-108 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011932 [exp] 571 / 0 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 557 / 0 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10021066 [exp] 423 / 2e-142 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 408 / 2e-137 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 390 / 3e-131 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10029126 [exp] 370 / 2e-123 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 343 / 3e-113 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10034041 [exp] 315 / 2e-102 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 315 / 2e-102 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10004159 [exp] 313 / 1e-100 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.006G071500.1 pacid=42769792 polypeptide=Potri.006G071500.1.p locus=Potri.006G071500 ID=Potri.006G071500.1.v4.1 annot-version=v4.1 ATGGCAAATTCCTCTTCTTTCAACCACCGTTACACTGTAATAACCTCATTATTCCTCGTCTCTTTCCTCTTAACAATTTTCCTCTTCAACAAACGAGCTC TTGAGCCCACTCTTTATTTCTACAGAGATTTCTTTCCACAAACAACGACTGCCTCCCACATTTCCTTGCCTAATTTCACCCTTCCCGACTCAGAAGAACC GGTTGACTCAGTGATTCACCAACCCATTTCTCAAAATGAGACAATTGAGTCCAAAACCGGTGATGATTCGAGAAATATGGAGGTGTCTACTGAAAATGAG GATGACCCAGATGGGGGTGTGGACTCTGGTGAGGATTTGATTTATAACTCAACAAATGTGGAGGTGTCTAGTGAAAATAAGAAAGACCCAGATGTGGATT TGGAGTCTGGTGGGGATTTGAGTGGCAATGGTGGTGATAAATTGATGGAGAGCTTGAAAAGTTGTGATCTTTATAGGGGTACTTGGGTGAAAGATGAAGA GTATCCGATTTATAAAGCGGGTTCTTGTCCTTATGTTGATGAGGCTTTTGATTGCCAAGGTAATGGAAGGAAAGATTCCGATTATCTTAAATGGCGTTGG AAGCCTAATGATTGTGATCTTCCAAGGTTTAATGCAACAGACTTCTTGACAAGATTGAGAGGTAAGAGGCTCATGCTGGTTGGAGACTCCATGAACCGAA ATCAGTTTGAATCAATGTTGTGTCTCCTTCGTGAAGGCCTGCCTGATAAGAGCAAAATGTTTGAGATCCATGGCCGCAGAATAACGAAGGGAAGAGGCTA CTATGTCTTCAAATTTGTGGATTTCAAGTGTACTGTGGAATTTGTGAGGTCACATTTCCTTGTAAAGGAAGGGGTGCGGATAAATGCACAAGGAAGCTCA AACCCAACTCTATCTATAGATGTAATTGACAAGACAGCAGGCCGATGGAAGAGGGCTGACATCCTGGTTTTTAATACTGGGCACTGGTGGACTCATGGAA AGACAGCTCGTGGGAAAAATTACTATAAAGAAGGTGACTATCTCTATCCAAAGTTTGATGCAGTTGAGGCTTACAGAAGGGCTCTAAGGACCTGGGGAAA GTGGATTGACAAAAATGTGAATCCAAAAAAGCAGTTGGTATTCTATCGTGGATACTCCTCAGCCCATTTCAGAGGTGGAGATTGGGATTCAGGAGGGACA TGCAACGGGGAGACTGAACCAGTTTTGAGGGGGTCAATTCTCAACAACTATCCTGTCAAAATGAAGATAGTGGAGGAGGTAATCCAGGAAATGAAGAATC CAGTTACACTGTTAAATGTCACTAGTTTGACCAATTTTCGAAAGGATGGGCATCCTTCAATCTTTGGCAAGAACGTAACTGCTGGGATAAAGGTCTCATC AAGGCGCCAAGACTGCAGCCATTGGTGTCTTCCAGGTGTCCCTGATGCATGGAATGAGCTCATATATGCAACCCTGGTTCAACATTGA
AA sequence Show only first row Show all	>Potri.006G071500.1 pacid=42769792 polypeptide=Potri.006G071500.1.p locus=Potri.006G071500 ID=Potri.006G071500.1.v4.1 annot-version=v4.1 MANSSSFNHRYTVITSLFLVSFLLTIFLFNKRALEPTLYFYRDFFPQTTTASHISLPNFTLPDSEEPVDSVIHQPISQNETIESKTGDDSRNMEVSTENE DDPDGGVDSGEDLIYNSTNVEVSSENKKDPDVDLESGGDLSGNGGDKLMESLKSCDLYRGTWVKDEEYPIYKAGSCPYVDEAFDCQGNGRKDSDYLKWRW KPNDCDLPRFNATDFLTRLRGKRLMLVGDSMNRNQFESMLCLLREGLPDKSKMFEIHGRRITKGRGYYVFKFVDFKCTVEFVRSHFLVKEGVRINAQGSS NPTLSIDVIDKTAGRWKRADILVFNTGHWWTHGKTARGKNYYKEGDYLYPKFDAVEAYRRALRTWGKWIDKNVNPKKQLVFYRGYSSAHFRGGDWDSGGT CNGETEPVLRGSILNNYPVKMKIVEEVIQEMKNPVTLLNVTSLTNFRKDGHPSIFGKNVTAGIKVSSRRQDCSHWCLPGVPDAWNELIYATLVQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.006G071500 [exp]	0	1
AT3G19340			Protein of unknown function (D...		Potri.002G237700 [exp]	4.47	0.8136
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	8.60	0.8124
AT3G56370			Leucine-rich repeat protein ki...		Potri.019G058600 [exp]	10.95	0.7849
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.017G111700 [exp]	11.74	0.8012
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	12.12	0.7701
AT5G17600			RING/U-box superfamily protein...		Potri.003G093100 [exp]	13.41	0.7940
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	14.07	0.7903
AT2G22140		ATEME1B	essential meiotic endonuclease...		Potri.007G077400 [exp]	17.14	0.7341
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.009G058600 [exp]	21.16	0.7803	Pt-SMT.2
AT4G31890			ARM repeat superfamily protein...		Potri.006G263100 [exp]	23.91	0.7831

Compare expression of checked genes

Potri.006G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.