Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06710 163 / 4e-49 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT2G22800 160 / 7e-49 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G37790 154 / 2e-46 HD HAT22 Homeobox-leucine zipper protein family (.1) AT4G16780 145 / 7e-43 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT3G60390 146 / 9e-43 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT2G44910 143 / 2e-41 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT5G47370 142 / 2e-41 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G17460 138 / 4e-40 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G01430 129 / 2e-36 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 119 / 2e-33 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133100 [exp] 318 / 9e-112 AT5G06710 163 / 3e-49 homeobox from Arabidopsis thaliana (.1.2) Potri.006G193700 [exp] 163 / 3e-49 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.007G008200 [exp] 160 / 6e-49 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.002G113400 [exp] 158 / 6e-48 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.005G147100 [exp] 158 / 1e-47 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.016G059000 [exp] 159 / 2e-47 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 159 / 3e-47 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 159 / 4e-47 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 154 / 4e-47 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004161 [exp] 166 / 4e-50 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10021064 [exp] 163 / 6e-50 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 162 / 3e-48 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 160 / 1e-47 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10040175 [exp] 152 / 6e-45 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004759 [exp] 152 / 8e-45 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 152 / 1e-44 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 151 / 1e-44 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10027633 [exp] 138 / 8e-41 AT4G37790 138 / 3e-40 Homeobox-leucine zipper protein family (.1) Lus10011935 [exp] 134 / 3e-39 AT4G37790 142 / 1e-41 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.006G071600.1 pacid=42768105 polypeptide=Potri.006G071600.1.p locus=Potri.006G071600 ID=Potri.006G071600.1.v4.1 annot-version=v4.1 ATGGAAGAAGAAGGGTACTGTAACACAAGACTTGGGCTTGGACTAGGAGGTGAAAACTATGCGCCATGGCCGCAGAAACAGAAGGAGAAGCCTGTGGTAC GTCTAGACCTCTCATTTACACTCTGCCCTGATCAAGACGATTCCATGAATATAGATCATCATGGCAAGGCAGAGGGGACATGCTTCAAGTCTGAAGAAGA TGAGGATTATGGAAATAAGAGAAGTGATCATTCCATTGATAATAGCTGCATGTATGGTACTGGTAGAAAGAAACTCAGGCTTACAAAAGACCAATCAAGC TACCTTGAGGAGAGCTTTCGAAGGCATCCCACTCTTAATCCGGCTAAGAAGCATGCACTCGCTGAGCAATTGAATTTAAAGCCGAGACAAGTTGAAGTCT GGTTTCAAAACAGGAGGGCAAGGACCAAGCTGAAGCAAACAGAGGCAGACTGTGAACTCTTGAAGAAATGTTGTGAAAGTTTGAGCAATGAGAATAGAAG ATTGAAGAGAGAATTGCAAGAATTAAGGTCACAAAAAACTGGACGGTCGTCGTCGTCGCACTCTCAGCTTGCAAAGGATTTGGGTACAATTACAAAGTGT CCTTCATGTGAGGAAAGCACCACAACTGATCAGAACAAAATGTAG
AA sequence Show only first row Show all	>Potri.006G071600.1 pacid=42768105 polypeptide=Potri.006G071600.1.p locus=Potri.006G071600 ID=Potri.006G071600.1.v4.1 annot-version=v4.1 MEEEGYCNTRLGLGLGGENYAPWPQKQKEKPVVRLDLSFTLCPDQDDSMNIDHHGKAEGTCFKSEEDEDYGNKRSDHSIDNSCMYGTGRKKLRLTKDQSS YLEESFRRHPTLNPAKKHALAEQLNLKPRQVEVWFQNRRARTKLKQTEADCELLKKCCESLSNENRRLKRELQELRSQKTGRSSSSHSQLAKDLGTITKC PSCEESTTTDQNKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.006G071600 [exp]	0	1
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.013G090400 [exp]	8.24	0.9558
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	14.00	0.9487
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	15.00	0.9463
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	18.16	0.9405
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	20.97	0.9441	Pt-AO1.3
					Potri.002G247600 [exp]	24.79	0.9343
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	25.59	0.9429
AT3G02645			Plant protein of unknown funct...		Potri.001G337900 [exp]	28.00	0.9400
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	33.49	0.9385
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	35.44	0.9396	CBP60.6

Compare expression of checked genes

Potri.006G071600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.