Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29850 176 / 6e-59 Eukaryotic protein of unknown function (DUF872) (.1) AT2G19350 169 / 4e-56 Eukaryotic protein of unknown function (DUF872) (.1) AT3G29170 55 / 7e-11 Eukaryotic protein of unknown function (DUF872) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133500 [exp] 193 / 1e-65 AT4G29850 154 / 3e-50 Eukaryotic protein of unknown function (DUF872) (.1) Potri.006G053300 [exp] 64 / 3e-14 AT3G29170 132 / 3e-41 Eukaryotic protein of unknown function (DUF872) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039596 [exp] 173 / 1e-57 AT4G29850 169 / 3e-56 Eukaryotic protein of unknown function (DUF872) (.1) Lus10016385 [exp] 167 / 3e-54 AT4G29850 171 / 2e-55 Eukaryotic protein of unknown function (DUF872) (.1) Lus10019737 [exp] 163 / 1e-53 AT4G29850 167 / 3e-55 Eukaryotic protein of unknown function (DUF872) (.1) Lus10007465 [exp] 64 / 3e-14 AT3G29170 125 / 2e-38 Eukaryotic protein of unknown function (DUF872) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G072000.1 pacid=42768935 polypeptide=Potri.006G072000.1.p locus=Potri.006G072000 ID=Potri.006G072000.1.v4.1 annot-version=v4.1 ATGGCGTATGTGGATCATGCATTCTCAATAACTGATGAAGATTTAATGGTGGAGACATCGTATGCAGTCAATAATAAGCCTCCTATTAAAGAGATTGCTC TTGCTATTTCTCTTCTTGTTTTTGGTGTCGCTGGTATTGTTTTGGGCATTTTCATGACTTACAACAGTGTTGGTGGTGATAGAGCTCATGGGCTTTTCTT TGCAATATTGGGAGTGGTGCTGTTTATACCAGGGTTTTATTATACAAGGATTGCATATTTTGCATATAAAGGATACACGGGCTTCTCTTTCTCCAACATA CCGCCTGTTTAA
AA sequence Show only first row Show all	>Potri.006G072000.1 pacid=42768935 polypeptide=Potri.006G072000.1.p locus=Potri.006G072000 ID=Potri.006G072000.1.v4.1 annot-version=v4.1 MAYVDHAFSITDEDLMVETSYAVNNKPPIKEIALAISLLVFGVAGIVLGIFMTYNSVGGDRAHGLFFAILGVVLFIPGFYYTRIAYFAYKGYTGFSFSNI PPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29850			Eukaryotic protein of unknown ...		Potri.006G072000 [exp]	0	1
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.010G227700 [exp]	1.73	0.7458
AT3G11890			Sterile alpha motif (SAM) doma...		Potri.006G198500 [exp]	2.00	0.8048
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.001G250400 [exp]	3.46	0.7357	Pt-ATPH1.2
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.014G042700 [exp]	6.92	0.6921
AT1G51200			A20/AN1-like zinc finger famil...		Potri.001G018600 [exp]	12.36	0.7221
AT4G25180			RNA polymerase III RPC4 (.1)		Potri.003G107300 [exp]	12.40	0.7533
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.014G168900 [exp]	13.56	0.7442
AT2G23780			RING/U-box superfamily protein...		Potri.005G127900 [exp]	13.56	0.7250
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.002G123100 [exp]	13.60	0.6573
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	15.32	0.7379	LSD1.2

Compare expression of checked genes

Potri.006G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.