Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 343 / 5e-115 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 313 / 4e-103 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G76360 306 / 1e-99 Protein kinase superfamily protein (.1) AT5G01020 299 / 6e-98 Protein kinase superfamily protein (.1) AT5G15080 299 / 9e-97 Protein kinase superfamily protein (.1) AT1G61590 295 / 3e-96 Protein kinase superfamily protein (.1) AT2G28930 294 / 4e-96 APK1B protein kinase 1B (.1.2.3) AT2G02800 293 / 3e-95 Kin2, APK2B protein kinase 2B (.1.2) AT3G28690 290 / 7e-95 Protein kinase superfamily protein (.1.2.3) AT3G01300 293 / 8e-95 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G135300 [exp] 595 / 0 AT2G17220 358 / 1e-121 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138401 [exp] 563 / 0 AT2G17220 342 / 2e-115 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G133801 [exp] 475 / 8e-167 AT2G17220 372 / 1e-126 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G134100 [exp] 475 / 1e-166 AT2G17220 386 / 6e-132 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138900 [exp] 400 / 1e-137 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G139000 [exp] 385 / 3e-131 AT2G17220 362 / 8e-123 kinase 3, Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 372 / 2e-126 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G135001 [exp] 360 / 8e-124 AT2G17220 184 / 1e-55 kinase 3, Protein kinase superfamily protein (.1.2) Potri.018G138700 [exp] 357 / 5e-120 AT2G17220 377 / 4e-128 kinase 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023000 [exp] 339 / 2e-113 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 339 / 3e-113 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 348 / 6e-110 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10012256 [exp] 322 / 1e-106 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10013832 [exp] 346 / 2e-106 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024512 [exp] 321 / 4e-106 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10016020 [exp] 319 / 9e-106 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10008015 [exp] 320 / 1e-105 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 303 / 3e-98 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 302 / 4e-98 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G072100.1 pacid=42768686 polypeptide=Potri.006G072100.1.p locus=Potri.006G072100 ID=Potri.006G072100.1.v4.1 annot-version=v4.1 ATGGGAATTTGCTGCAGTTGCATTTCTTGTAATCCAGCCGCAGGCCCAGATCCTGCAACTGCCCCAGCTACAGCTCCTGCAACTGCCCCAGCTACAGATC CTGCAACAGTCCCAGCTGCAACTCCAGTTCCAGAACTAGCCCTGGATCCATTCCCTGACCCAGACATAGTTCCTACCTCTCCTGGAAATCTCACTGAAGG TGATGTATCTTCGATGGCTAACAATGTCTCCGGCAACAGCTGGTTCTCTATAGCCACCACCAATGTCACAACATGGATGTCTCAAGCAAAGGGAACTATT CGGGGTAAATTTGTCCCCGAGGAAGTTGAATTCTCAGCTTTTCAAGATAAAATTGTGTCAGAGTTAAGAGTTTTCACGTTTAAACAATTGAAGGAAGCAA CCTTCAATTTTAGAAGTGATATGTTGCTGGGAAAGGGAGGGTTTGGCAGTGTCTACAAGGGTTTGCTCAACCAAAAGCTGCCGATTGAGGGTATTAGGAA TCTTCGCATTGCTGTCAAGAAATTGGATTCAAACAGCAAGCAAGGACTTCGACAGTGGCAGACGGAGGTCGGTTTCTTAGCAAGGGTTTCTCATCCTAAC ATTGTAGAGCTGCTAGGATACTGTCAGGCTGAAGGAGATAAAGAGTTGCTTATTGTCTATGAATTCATGGAGAAAGGCAGTTTAAATTACCATTTGTTTG GGAAGCGCTCAGACCGGGTACTTCCTTGGGAAACAAGGGTAGAGATTGCTACAGGAATGGCTCAAGCCTTGTCTTATTTGCATACAATGGAGAGGCCAGT AATTTTCAGAGACTTCAAGACCTCAAATATTTTGCTTAATGAGTCCTATATTCCAAAGTTGTCAGATTTTGGCTTAGCAAAATGGGGACCCAATGATGGC AGTCAATATGTAACAGGAAATGTTTTGGGCACTCGTGGTTATGTTGGTCCTGAATACAAGACTGGAGGAAGACTGTATGTGAAGAGCGATGTGTACAGTT TCGGAGTAGTTTTGGTCGAGATGCTGACAGGATTACGGGCAATTGATAAAAATCGCCCACCTGAGAAACAAAATCTGCGGGAATGGACTTTGCCAATTCT ATCAGATAGAACAAAGTTGAGACATATAATGGATCCCAGGTTGCAGGGGAAGTATGCAACCAAACAAGCTCCAGAAGTGGCTAAGCTTGCTCTGAGATGC CTTAACCCAGTTCCTATGTTCCGGCCATCAATGAAGGAAGTTGCCGATACATTAGAAGGATTAAACCTCCATACCTCACATCAGAACAAAGACATTTAA
AA sequence Show only first row Show all	>Potri.006G072100.1 pacid=42768686 polypeptide=Potri.006G072100.1.p locus=Potri.006G072100 ID=Potri.006G072100.1.v4.1 annot-version=v4.1 MGICCSCISCNPAAGPDPATAPATAPATAPATDPATVPAATPVPELALDPFPDPDIVPTSPGNLTEGDVSSMANNVSGNSWFSIATTNVTTWMSQAKGTI RGKFVPEEVEFSAFQDKIVSELRVFTFKQLKEATFNFRSDMLLGKGGFGSVYKGLLNQKLPIEGIRNLRIAVKKLDSNSKQGLRQWQTEVGFLARVSHPN IVELLGYCQAEGDKELLIVYEFMEKGSLNYHLFGKRSDRVLPWETRVEIATGMAQALSYLHTMERPVIFRDFKTSNILLNESYIPKLSDFGLAKWGPNDG SQYVTGNVLGTRGYVGPEYKTGGRLYVKSDVYSFGVVLVEMLTGLRAIDKNRPPEKQNLREWTLPILSDRTKLRHIMDPRLQGKYATKQAPEVAKLALRC LNPVPMFRPSMKEVADTLEGLNLHTSHQNKDI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.006G072100 [exp]	0	1
AT1G67680			SRP72 RNA-binding domain (.1)		Potri.006G216400 [exp]	4.35	0.9116
AT2G38710			AMMECR1 family (.1.2)		Potri.008G019325 [exp]	6.92	0.8959
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.001G019400 [exp]	9.64	0.9057
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	11.66	0.9077	Pt-ADR12.2
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.004G143100 [exp]	13.41	0.8803
AT5G57300			S-adenosyl-L-methionine-depend...		Potri.018G088400 [exp]	13.56	0.8930
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	14.24	0.8949
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	16.27	0.9031
AT3G50120			Plant protein of unknown funct...		Potri.016G039700 [exp]	17.66	0.8866
AT3G54470			uridine 5'-monophosphate synth...		Potri.003G198501 [exp]	18.43	0.8790

Compare expression of checked genes

Potri.006G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.