Plant FIBer expression Database

Potri.006G072300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G139200
[exp]
123 / 1e-37 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G072300.1 pacid=42767538 polypeptide=Potri.006G072300.1.p locus=Potri.006G072300 ID=Potri.006G072300.1.v4.1 annot-version=v4.1
ATGGGTCTTGAAGTTTCAGGAGAATTCAGGCCAGTTACACCAATAAGAACAGTTTCCGCTGCAAGAATATGCGGTGCTAGTACTAGTCTTGGAGCAAAAC
TCTGTGAAGCCAAGGAAGCAGATGCAAAGGAGAATCTCGGTTTTGATGAAGATGATCAAGAGTGTAGTAGTCCTAGCACACCAAAGTCACCAGCTCATGT
TTTGAAGTCACCACTGGTGTGCCCTCCAGCTCCGAAGAAACCTAGGCCTCCTAAGAGGAAATTGAGTCCTCCTCCACAAGGGTTCTTCAAAATCCCAGTA
CATGATTTAGATTCGGTTTGTATGGGTTTCACAGCATGTAATTCCAAGAAGATCAGAACAGCTTAA
AA sequence
>Potri.006G072300.1 pacid=42767538 polypeptide=Potri.006G072300.1.p locus=Potri.006G072300 ID=Potri.006G072300.1.v4.1 annot-version=v4.1
MGLEVSGEFRPVTPIRTVSAARICGASTSLGAKLCEAKEADAKENLGFDEDDQECSSPSTPKSPAHVLKSPLVCPPAPKKPRPPKRKLSPPPQGFFKIPV
HDLDSVCMGFTACNSKKIRTA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G072300
[exp]
0 1
AT2G46710 Rho GTPase activating protein ... Potri.014G103600
[exp]
8.24 0.8389
AT5G56540 ATAGP14, AGP14 arabinogalactan protein 14 (.1... Potri.001G004100
[exp]
12.32 0.8168 Pt-AGP13.2
AT3G56930 DHHC-type zinc finger family p... Potri.016G025100
[exp]
19.00 0.7860
Potri.007G007000
[exp]
28.03 0.8098
AT2G04850 Auxin-responsive family protei... Potri.002G222600
[exp]
29.39 0.8136
AT5G06610 Protein of unknown function (D... Potri.006G196800
[exp]
66.29 0.7893
AT1G19870 IQD32 IQ-domain 32 (.1) Potri.002G025200
[exp]
68.12 0.7841
AT5G24320 Transducin/WD40 repeat-like su... Potri.012G018200
[exp]
78.74 0.7444
AT2G20190 ATCLASP CLIP-associated protein (.1) Potri.002G253200
[exp]
79.69 0.7793
AT2G40435 unknown protein Potri.006G106900
[exp]
81.38 0.7780

Potri.006G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.