Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31550 297 / 3e-100 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G24570 283 / 1e-94 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT4G24240 181 / 8e-55 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G23320 174 / 2e-52 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT2G30590 172 / 8e-51 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT3G04670 170 / 2e-50 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT5G28650 169 / 2e-50 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT1G29280 109 / 4e-28 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT2G34830 110 / 3e-27 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 107 / 3e-26 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139300 [exp] 443 / 3e-158 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.007G047400 [exp] 218 / 4e-69 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.018G008500 [exp] 213 / 3e-67 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2) Potri.005G141400 [exp] 203 / 2e-63 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 188 / 3e-57 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 187 / 7e-57 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.002G043500 [exp] 177 / 6e-53 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.005G055300 [exp] 176 / 1e-52 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2) Potri.013G042600 [exp] 174 / 7e-52 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020136 [exp] 297 / 4e-100 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10026936 [exp] 293 / 2e-98 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10041600 [exp] 205 / 5e-64 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10010053 [exp] 193 / 3e-59 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10006261 [exp] 191 / 2e-58 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2) Lus10042538 [exp] 173 / 4e-52 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10024864 [exp] 172 / 3e-51 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10014745 [exp] 171 / 8e-51 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10018776 [exp] 171 / 9e-51 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10033857 [exp] 168 / 1e-49 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain CL0274 [poplar] [flax] PF10533 [poplar] [flax] Plant_zn_clust Plant zinc cluster domain
Representative CDS sequence Show only first row Show all	>Potri.006G072400.1 pacid=42770607 polypeptide=Potri.006G072400.1.p locus=Potri.006G072400 ID=Potri.006G072400.1.v4.1 annot-version=v4.1 ATGGCTGTGGATCTAGTTAGGTATTCAAAGATGGAAGATCAGATGGCTATACAAGAAGCTGCATCAGCTGGGCTCGAGAGCATGGAGCACTTGATCTTTG CATTCTCTAACCAAACTCGACAAAGCCACCAACTTGACTGCGGAGAAATCACAAACTTCACCGTTGCTAAGTTCAAGCAAGTCATCTCCATGTTGAACCG GACCGGTCATGCCCGTTTTCGCCGTGGACCAACTTCTTCTCCTTCTTCCTACCCGGTTCCCGTCCGACCTGTCCCTCAAGAGCCTCAAAAACTGAACCTT GATTTTGTTAACAGTAATAGCCCCCCTAAAGCTGAGTCGAAAAATGACCTGTCTTTGGGTAGTCAGTATTCAAAGGATAGCCTTAGCTCTGGCACCACTA CCTCATCCTTCGTGTCTTCTGTTACAGCTGATGGGAGTGTCTCTAATGGGAAACAAGGTGGCTCTTCTCTTTTCGGAACTCAAGCGCGATCTACCGGAAA ACCACCTCTCTCATCGACCCACCGCAAGAAATGCCACGATCATGCCCTCTCCGCCAGAAAGATCTCCTCCGGTGGAAGCTGTCATTGCTCCAAAAGAAGG AAATCAAGGGTTAAGAGGACAATAAGGGTACCAGCCGTGAGTTCCAAGATTGCCGATATACCAGCAGATGAGTACTCATGGAGAAAATATGGTCAAAAGC CAATCAAGGGCTCACCATACCCAAGAGGGTATTACAAGTGTAGCAGTGTTAGAGGATGTCCAGCAAGGAAGCATGTGGAGCGTGCCGTAGATGACTCGGC CATGCTTATCGTGACTTACGAGGGGGAGCACCGTCACTCACATACTCCGTTGCCGGGAGACGTCACCGCGAGTGCTGCAATGCGACACGTGTTTCACTCA ACATGA
AA sequence Show only first row Show all	>Potri.006G072400.1 pacid=42770607 polypeptide=Potri.006G072400.1.p locus=Potri.006G072400 ID=Potri.006G072400.1.v4.1 annot-version=v4.1 MAVDLVRYSKMEDQMAIQEAASAGLESMEHLIFAFSNQTRQSHQLDCGEITNFTVAKFKQVISMLNRTGHARFRRGPTSSPSSYPVPVRPVPQEPQKLNL DFVNSNSPPKAESKNDLSLGSQYSKDSLSSGTTTSSFVSSVTADGSVSNGKQGGSSLFGTQARSTGKPPLSSTHRKKCHDHALSARKISSGGSCHCSKRR KSRVKRTIRVPAVSSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAVDDSAMLIVTYEGEHRHSHTPLPGDVTASAAMRHVFHS T

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.006G072400 [exp]	0	1
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	1.00	0.7686
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G139300 [exp]	2.44	0.7128
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.009G060400 [exp]	3.74	0.6826
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	9.16	0.7383
AT2G33400			unknown protein		Potri.008G170600 [exp]	10.95	0.6443
AT4G34150			Calcium-dependent lipid-bindin...		Potri.002G123200 [exp]	11.74	0.6861
AT5G12440	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.001G276300 [exp]	12.84	0.6585
AT1G07175			unknown protein		Potri.009G072201 [exp]	14.45	0.6301
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	20.19	0.5960
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.014G036600 [exp]	23.00	0.6217

Compare expression of checked genes

Potri.006G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.