Plant FIBer expression Database

Potri.006G072800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29890 557 / 0 choline monooxygenase, putative (CMO-like) (.1)
AT1G44446 45 / 0.0001 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G083200
[exp]
44 / 0.0001 AT1G44446 799 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Potri.005G178300
[exp]
44 / 0.0002 AT1G44446 843 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032689
[exp]
622 / 0 AT4G29890 529 / 0.0 choline monooxygenase, putative (CMO-like) (.1)
Lus10008571
[exp]
619 / 0 AT4G29890 528 / 0.0 choline monooxygenase, putative (CMO-like) (.1)
Lus10000218
[exp]
44 / 0.0002 AT1G44446 858 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0516 ISP-domain PF00355 Rieske Rieske [2Fe-2S] domain
CL0209 Bet_v_1_like PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Representative CDS sequence
>Potri.006G072800.1 pacid=42767995 polypeptide=Potri.006G072800.1.p locus=Potri.006G072800 ID=Potri.006G072800.1.v4.1 annot-version=v4.1
ATGACCATGATCACTGCAACTACAATGGCAGTACTGCTCAAACCCATGATCACTGCTCACCGCCTTCTCCTCTTCCAAACCCAAAAACACACTTCAATTA
TTGCAAAACAACAAAAACAACACGGGTCTCTTCTTGTTGCCAGCTCTGTCCGTCAGAGTGATAACTACTGTCAAAATCTGGTCGATGAATTTGACCCAAA
TATTCCTATAGAGAAAGCCTTGACCCCACCTAGCTCATGGTACACCGACCCTTCTTTTTTTGATTTTGAACTCCATCGTGTCTTCTATAAAGGCTGGCAG
GCTGTTGGATATACTGAACAGATAAAGAATCCTCGTGATTTTTTCACTGGAAGATTGGGGAATGTAGAGTTTCTGGTGTGTCGAGATGATGATGGCAAGA
TTCATGCTTTTCACAATGTGTGTCGCCATCATGCCTCTCTTGTTGCATCTGGAAATGGGCAAAAGTCTTGTTTTGTATGCCCTTATCATGGGTGGACATA
TGGGTTGGATGGAGCACTTCTTAAAGCAACCAGGATAACCGGGATCCAAAATTTTGATGTAAATGAGTTTGGGCTTAAACCACTAAATGTAGCAACTTGG
GGGCCATTTGTTCTTCTCAATTTGGACAAGGAGATTTTACCTCAGCAAGAAGCTGACAATACAGTGGGGAGTGAATGGCTTGGTAGCTGTTCAGAATATC
TTGCTGCAAATGGAGTTGATTCTTCTCTAAGCTATCTTTGCAGGCGTGTATACGATATTGAATGTAACTGGAAGGTGTTCTGTGATAATTACTTAGATGG
TGGTTACCATGTACCATATGCTCATAAAGGCCTTGCATCTGGTCTTAAGCTTAATTCTTACTCCACCAAGACATATGAAAAGGTTAGCATCCAAAGTTGT
GATGGTGGCTCGACAGAAAGCGAAGATGATATTGATCGACTTGGGTCAAAAGCCTTGTATGCTTTCATTTACCCTAATTTTATGATTAACAGGTATGGAC
CATGGATGGACACTAATCTGGTACTCCCGCTAGGACCCAGGAAATGCCAGGTGATATTTGACTACTTTATTGAAGCCCATCTCAAGGACGACAAAGATTT
CATAGAAAGAAGTCTAGTTGATAGTGAGAGAGTGCAGATAGAAGATATCGTGCTGTGTGAAGGTGTTCAGAGAGGCCTTGAAACACCAGCATACTGTAGC
GGCAGATACGCTCCCATGGTTGAGCATGCCATGCACCATTTCCACCAATTGCTTCACTATATACTCAAAGAATGA
AA sequence
>Potri.006G072800.1 pacid=42767995 polypeptide=Potri.006G072800.1.p locus=Potri.006G072800 ID=Potri.006G072800.1.v4.1 annot-version=v4.1
MTMITATTMAVLLKPMITAHRLLLFQTQKHTSIIAKQQKQHGSLLVASSVRQSDNYCQNLVDEFDPNIPIEKALTPPSSWYTDPSFFDFELHRVFYKGWQ
AVGYTEQIKNPRDFFTGRLGNVEFLVCRDDDGKIHAFHNVCRHHASLVASGNGQKSCFVCPYHGWTYGLDGALLKATRITGIQNFDVNEFGLKPLNVATW
GPFVLLNLDKEILPQQEADNTVGSEWLGSCSEYLAANGVDSSLSYLCRRVYDIECNWKVFCDNYLDGGYHVPYAHKGLASGLKLNSYSTKTYEKVSIQSC
DGGSTESEDDIDRLGSKALYAFIYPNFMINRYGPWMDTNLVLPLGPRKCQVIFDYFIEAHLKDDKDFIERSLVDSERVQIEDIVLCEGVQRGLETPAYCS
GRYAPMVEHAMHHFHQLLHYILKE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29890 choline monooxygenase, putativ... Potri.006G072800
[exp]
0 1
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.001G074400
[exp]
5.47 0.8337 ENOD8.2
AT5G19830 Peptidyl-tRNA hydrolase family... Potri.001G005000
[exp]
7.74 0.8124
Potri.014G144550
[exp]
8.06 0.7961
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Potri.004G095400
[exp]
9.79 0.7933 LPP3.2
AT3G14000 ATBRXL2, BRX-LI... DZC (Disease resistance/zinc f... Potri.003G063200
[exp]
9.94 0.7982
AT3G11710 ATKRS-1 lysyl-tRNA synthetase 1 (.1) Potri.018G090400
[exp]
10.72 0.8117
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.005G130800
[exp]
12.32 0.8213
AT1G10020 Protein of unknown function (D... Potri.002G112600
[exp]
15.87 0.7962
AT3G17830 Molecular chaperone Hsp40/DnaJ... Potri.015G035300
[exp]
16.79 0.8175
AT1G72510 Protein of unknown function (D... Potri.001G166900
[exp]
17.66 0.8075

Potri.006G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.