Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29900 1550 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 1547 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 1490 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 973 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 936 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT4G37640 884 / 0 ACA2 calcium ATPase 2 (.1) AT1G27770 880 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G22950 879 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT3G57330 877 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 874 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139800 [exp] 1855 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 1564 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 1540 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.018G139900 [exp] 1408 / 0 AT5G57110 1210 / 0.0 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) Potri.005G215600 [exp] 1019 / 0 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G159100 [exp] 1015 / 0 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G047500 [exp] 993 / 0 AT3G63380 1411 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 989 / 0 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 987 / 0 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001638 [exp] 1741 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 1736 / 0 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10034840 [exp] 1530 / 0 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10033386 [exp] 1523 / 0 AT3G21180 1615 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10018687 [exp] 893 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10042040 [exp] 875 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 863 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10011522 [exp] 861 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10016366 [exp] 851 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10031053 [exp] 827 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF12515 [poplar] [flax] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain
Representative CDS sequence Show only first row Show all	>Potri.006G072900.7 pacid=42770343 polypeptide=Potri.006G072900.7.p locus=Potri.006G072900 ID=Potri.006G072900.7.v4.1 annot-version=v4.1 ATGACAAGTTTGTTCAAAAGCTCGCCGTATAGAAGACGGCGAGATGATTTGGAAGCCGGAGAAAGTCGTTCTACTGGCTTTGATGTCGACGACGGCGACT CGTCGGATCCTTTTGATATCCCCAGCACCAAAAACGCCTCCATCGGCCGCCTCCGCCGATGGCGGCAAGCTGCGCTTGTACTTAATGCTTCTAGAAGATT CCGGTATACATTGGACTTGAAAAAGGAAGAAGAGAAACAGCAAATATTAAGGAAGATAAGAGCACATGCTCAAGCTATACGGGCCGCATATCTTTTCAAA GAAGCGGGGAAAAGAGTAAATGGAACCGCAGAATTACACATTCTGCCACCCCCAGTTGGTGATTTTGGAATTAGCCAAGATCAACTTTCTACAATCACGA GAGATCATAATCATAATGCTTTGGAGGAAATTGGTGGGGTAAAAGGAGTTGCAGATGCCTTAAAAACTAATACAGAGAAGGGAATTTATGGAGATGATGC TGATTTACTAAAACGGAAGAATGCATTTGGATCAAATACATATCCTCAGAAAAAAGGAAGGAGTTTTTGGATGTTCCTTTGGGAAGCTTGGCAAGATCTT ACTTTAATCATATTGATGATAGCTGCAGTGGCTTCTTTGGTGCTGGGCATAAAGACAGAGGGTATTAAGGAAGGATGGTATGATGGGGCCAGCATTGCCT TTGCAGTTATCCTTGTCATTGTTGTGACAGCTATAAGTGACTACAAACAATCTCTTCAGTTCCAAAATCTAAACGAGGAGAAGAGAAACATACATTTGGA GGTTATCAGAGGAGGTAGAAGAATTGAAGTTTCTATATATGATATTGTTGTAGGTGATGTCATACCCCTTAACATTGGTGATCAGGTACCTGCTGATGGA ATTTTAATTACTGGTCACTCTCTAGCTATTGATGAATCAAGCATGACTGGAGAAAGCAAGATTGTTCATAAGAATTCCAGGGAACCATTTCTAATGTCTG GCTGCAAAGTTGCGGATGGTAGTGGTACTATGCTGGTAACCGGTGTTGGAATTAATACTGAATGGGGGTTGCTCATGGCTAGTATTTCAGAAGACACTGG TGAAGAAACACCTTTGCAGGTGCGCTTGAATGGGGTTGCAACTTTCATTGGTATTGTGGGGCTTACAGTAGCTTTGCTTGTCTTGATAGTCCTTTTAGTC AGATATTTCACTGGCCATACAAAAAATTTTGATGGAAGTCCTCAGTTTAAAGCGGGTAAAACAAAAGCTAGTACAGCAGTAGATGGAGCCATTAAAATTC TCACTGTTGCGGTTACCATTGTTGTAGTTGCAGTGCCTGAAGGGCTTCCCTTAGCAGTTACTTTAACTCTTGCCTACTCGATGAGAAAAATGATGAGGGA TAAGGCTTTGGTGCGCCGACTTTCTGCCTGTGAAACTATGGGCTCTGCCACAACTATTTGCAGTGATAAGACTGGAACTTTAACCTTGAATCAGATGACC ATTGTAGAAGCTTATTCTGGAGGACAAAAAATTGATCCTCCAGACAGTAAATCACAGTTGCCTCCTATTTTGTCTTCTTTACTCATGGAAGGCATTGCAC AGAACACAACCGGCAGTGTTTTTGTTCCTGAGGGAGGTGGAGATCCAGAGATTTCTGGATCACCAACAGAAAAGGCCATTCTTGGATGGGCAGTCAAGCT GGGGATGAATTTCGATGCTGTTCGATCTGAATCCAGTATCATTCATGTATTCCCATTCAACTCTGAGAAGAAAAAAGGCGGTGTGGCACTACAACTGCCT GACTCTCAAGTGCATATACATTGGAAGGGGGCTGCCGAAATAGTATTAGCCTCATGTACGGAATACATCAACGCAAGTGGTAAAATCGTGCCATTGGATC AAGACAAGGTGTTGTTTTTTAAGAAATCTATTGAAGATATGGCTGCCAGTAGTTTGCGTTGTGTTGCCATTGCATATAGAACATATGACATGGACAAAGT TCCAGCCGATGAACAACAGAAAACTCAATGGGAATTACCTCAAGATGATCTTGTTTTGCTTGCTATTGTTGGCATAAAGGACCCATGTCGTCCAGGTGTG AGAGATGCTGTTCAACTGTGCAAAAATGCTGGTGTGAAGGTACGCATGGTAACTGGTGACAATCCTCAAACTGCTAAAGCAATTGCCTTGGAATGTGGGA TACTGAGTTCAGCAGAAGATGCTGTGGAGCCTAATGTTATTGAAGGAAGAGTGTTTCGTAACTATTCAGATGCAGAAAGAGTGGAAATCGCAGAGAAGAT CTCGGTGATGGGGAGGTCTTCTCCAAATGACAAGCTTTTGTTTGTGCAAGCTTTGAAAAAGAGGGGACATGTTGTTGCTGTAACTGGAGATGGAACAAAT GATGCTCCTGCATTACATGAGGCAGACATTGGCCTTTCAATGGGTATTCAAGGGACAGAAGTTGCTAAAGAAAGCTCAGATATCATAATTTTGGATGACA ACTTTGCTTCAGTCGTGAAGGTTGTCCGTTGGGGTAGATCTGTATATGCAAATATCCAGAAATTTATCCAGTTTCAGCTTACAGTTAATGTTGCAGCTCT TATTATAAATGTTGTGGCTGCAATTTCTTCTGGTGATGTCCCATTAAATGCAGTGCAGCTCCTGTGGGTTAACCTTATCATGGATACTCTTGGAGCATTG GCACTGGCTACTGAGCCTCCAACAGATCACCTGATGCATAGACCTCCAGTTGGTCGTAGGGAACCACTAATTACAAATATCATGTGGAGGAACCTGCTGA TACAGGCAGCATATCAAGTGAGCGTGTTGCTTGTCCTTAATTTTCGAGGGAAGAGCTTACTGGGGTTGGAACATGAAACCCCTCAGCGTGCAAACAAGGT GAAGAATACCTTGATATTCAATGCATTTGTGCTCTGTCAGATCTTCAATGAATTCAATGCCCGGAAGCCAGATGAATTAAATATTTTCAAAGGGATTACA AAAAACCACCTTTTCGTTGTTATAGTTGGAATAACACTTGTACTTCAGGTTATCATTATTGAGTTTGTTGGGAAGTTCACTTCTACAGTCAAGCTCAATT GGAAACAGTGGCTGATTTCAGCAGTTATTGCTATTATCAGTTGGCCGCTTGCTGCTATTGGTAAACTGATACCTGTTCCACGAACTCCCTTGCACAAGTT CTTTACAAAGATGTTTCATCGAAGTGGTAACTCTCCAAGTGATCGGTAG
AA sequence Show only first row Show all	>Potri.006G072900.7 pacid=42770343 polypeptide=Potri.006G072900.7.p locus=Potri.006G072900 ID=Potri.006G072900.7.v4.1 annot-version=v4.1 MTSLFKSSPYRRRRDDLEAGESRSTGFDVDDGDSSDPFDIPSTKNASIGRLRRWRQAALVLNASRRFRYTLDLKKEEEKQQILRKIRAHAQAIRAAYLFK EAGKRVNGTAELHILPPPVGDFGISQDQLSTITRDHNHNALEEIGGVKGVADALKTNTEKGIYGDDADLLKRKNAFGSNTYPQKKGRSFWMFLWEAWQDL TLIILMIAAVASLVLGIKTEGIKEGWYDGASIAFAVILVIVVTAISDYKQSLQFQNLNEEKRNIHLEVIRGGRRIEVSIYDIVVGDVIPLNIGDQVPADG ILITGHSLAIDESSMTGESKIVHKNSREPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVALLVLIVLLV RYFTGHTKNFDGSPQFKAGKTKASTAVDGAIKILTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMRDKALVRRLSACETMGSATTICSDKTGTLTLNQMT IVEAYSGGQKIDPPDSKSQLPPILSSLLMEGIAQNTTGSVFVPEGGGDPEISGSPTEKAILGWAVKLGMNFDAVRSESSIIHVFPFNSEKKKGGVALQLP DSQVHIHWKGAAEIVLASCTEYINASGKIVPLDQDKVLFFKKSIEDMAASSLRCVAIAYRTYDMDKVPADEQQKTQWELPQDDLVLLAIVGIKDPCRPGV RDAVQLCKNAGVKVRMVTGDNPQTAKAIALECGILSSAEDAVEPNVIEGRVFRNYSDAERVEIAEKISVMGRSSPNDKLLFVQALKKRGHVVAVTGDGTN DAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGAL ALATEPPTDHLMHRPPVGRREPLITNIMWRNLLIQAAYQVSVLLVLNFRGKSLLGLEHETPQRANKVKNTLIFNAFVLCQIFNEFNARKPDELNIFKGIT KNHLFVVIVGITLVLQVIIIEFVGKFTSTVKLNWKQWLISAVIAIISWPLAAIGKLIPVPRTPLHKFFTKMFHRSGNSPSDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.006G072900 [exp]	0	1
AT3G53260		PAL2, ATPAL2	phenylalanine ammonia-lyase 2 ...		Potri.010G224100 [exp]	7.21	0.7542	PAL.3
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	8.60	0.7491
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	15.23	0.7107
AT5G65290			LMBR1-like membrane protein (....		Potri.007G096900 [exp]	16.12	0.6734
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	17.17	0.7072
AT1G30760			FAD-binding Berberine family p...		Potri.011G158700 [exp]	18.54	0.6948
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	20.19	0.6206
AT1G53190			RING/U-box superfamily protein...		Potri.001G373700 [exp]	20.59	0.6318
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	21.70	0.7227
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.013G051400 [exp]	27.65	0.6835	SEC.1

Compare expression of checked genes

Potri.006G072900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.