Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) AT3G13580 361 / 9e-128 Ribosomal protein L30/L7 family protein (.1.2.3) AT2G01250 361 / 1e-127 Ribosomal protein L30/L7 family protein (.1.2) AT1G80750 170 / 2e-52 Ribosomal protein L30/L7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140300 [exp] 407 / 5e-146 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.010G250900 [exp] 388 / 2e-138 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.008G008000 [exp] 381 / 1e-135 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.001G047400 [exp] 216 / 2e-70 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.003G180700 [exp] 207 / 4e-67 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021296 [exp] 355 / 2e-125 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10016970 [exp] 355 / 2e-125 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10004220 [exp] 354 / 7e-125 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10029423 [exp] 353 / 1e-124 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10019603 [exp] 212 / 1e-68 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10040040 [exp] 211 / 2e-68 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1) Lus10003176 [exp] 69 / 3e-13 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [poplar] [flax] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [poplar] [flax] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G073200.5 pacid=42770221 polypeptide=Potri.006G073200.5.p locus=Potri.006G073200 ID=Potri.006G073200.5.v4.1 annot-version=v4.1 ATGGGCGGGGAAGAAGTTAAGGTAGCGGTACCAGAGTCTGTGTTGAAAAAGCAGAAAAGGAATGAGGAATGGGCTTTGGCTAAGAAGGAAGAGAAGCTAG CTATAAAGAAGAAAAATGCTGAAAATCGCAAGTTGATTTACAGTAGGGCTAAGCAGTATGCCCAGCAATATGATGAGGAGCAAAAGGAGCTTATTAGGCT GAAGCGTGAAGCAAGACTCAAGGGAGGGTTCTATGTCAATCCAGAAGCTAAGCTGTTGTTTATCGTCAGGATCCGTGGTATCAATGCCATGCACCCAAAG ACAAGATCCATCCTGCAGCTTCTGCGTTTGAGACAGATATTCAACGGAGTATTCCTGAAAGTAAACAAAGCAACTGTGAATATGCTTCACAGGGTTGAGC CTTATGTGACTTTTGGGTATCCCAATTTAAAGAGTGTTAAAGAATTGATTTACAAGAGGGGCTATGGGAAACTGAACCAACAGCGAATTCCCTTGACTGA TAATTCAATCGTTGAACAGGGATTGGGCAAGCACGGAATAATCTGCATGGAAGATCTCATACATGAAATCATAACTGTTGGACCACATTTCAAGGAGGCA AACAACTTCCTGTGGCCTTTCCAGCTCAAGGCACCACTCGGAGGTTTGAAGAAAAAGAGAAACCATTATGTTGAAGGAGGTGATGCTGGAAACCGTGAAG ATTACATCAATGAGTTGATCAGGAGGATGAACTAG
AA sequence Show only first row Show all	>Potri.006G073200.5 pacid=42770221 polypeptide=Potri.006G073200.5.p locus=Potri.006G073200 ID=Potri.006G073200.5.v4.1 annot-version=v4.1 MGGEEVKVAVPESVLKKQKRNEEWALAKKEEKLAIKKKNAENRKLIYSRAKQYAQQYDEEQKELIRLKREARLKGGFYVNPEAKLLFIVRIRGINAMHPK TRSILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVKELIYKRGYGKLNQQRIPLTDNSIVEQGLGKHGIICMEDLIHEIITVGPHFKEA NNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44120			Ribosomal protein L30/L7 famil...		Potri.006G073200 [exp]	0	1
AT5G61170			Ribosomal protein S19e family ...		Potri.015G056100 [exp]	1.73	0.9086
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.014G197100 [exp]	2.00	0.9240
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.012G037500 [exp]	4.69	0.9196	Pt-RPL19.4
AT2G44860			Ribosomal protein L24e family ...		Potri.009G148500 [exp]	5.19	0.8570
AT1G07070			Ribosomal protein L35Ae family...		Potri.008G063200 [exp]	7.21	0.9076
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.010G210300 [exp]	7.41	0.8863	ATRPL23.2
AT3G05560			Ribosomal L22e protein family ...		Potri.002G204100 [exp]	7.74	0.9069	RPL22.4
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.003G078700 [exp]	10.09	0.8684	Pt-RPL15.4
AT4G39200			Ribosomal protein S25 family p...		Potri.010G239300 [exp]	10.95	0.8992
AT5G59240			Ribosomal protein S8e family p...		Potri.009G056900 [exp]	13.22	0.9076	Pt-RPS8.2

Compare expression of checked genes

Potri.006G073200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.