Plant FIBer expression Database

Potri.006G073450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G130500
[exp]
40 / 0.0002 AT5G03110 145 / 2e-41 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G073450.1 pacid=42770050 polypeptide=Potri.006G073450.1.p locus=Potri.006G073450 ID=Potri.006G073450.1.v4.1 annot-version=v4.1
ATGAAAAGTTTGCCCACTGTGCTAAAGGAGTGCGCCCGCGGCTGGAACGTTGATCTCCCCTTCACCTTCACTGTCAAAGAGAGAACCAGCACAAAACCAC
CATCTCAAGTTCTCAACCACCAAACCAGGCGAGGCTCGCCAACACGCCAGCAACAACTGCCCCTTTCACCAACCTCCAAAACCAAAGCTCCACACAATAA
CCTCAGCCTCATTTGTAGCTTCGGGTCTAGAGAGGGAGTTGTTTTCCCAACCCGACCAAACCAAGTGCAAATCCTGCAAATATTGAAGAGTCAGAAACAG
AAAAGGTTTCCGTTGTGTGGCCCTTGGTACTTACAAGTTGTAAATCTGAACCAGCAAGAACCGGAGAGAAGCTTGATCTAG
AA sequence
>Potri.006G073450.1 pacid=42770050 polypeptide=Potri.006G073450.1.p locus=Potri.006G073450 ID=Potri.006G073450.1.v4.1 annot-version=v4.1
MKSLPTVLKECARGWNVDLPFTFTVKERTSTKPPSQVLNHQTRRGSPTRQQQLPLSPTSKTKAPHNNLSLICSFGSREGVVFPTRPNQVQILQILKSQKQ
KRFPLCGPWYLQVVNLNQQEPERSLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G073450
[exp]
0 1
AT4G23020 unknown protein Potri.001G110900
[exp]
1.73 0.8589
AT1G56580 SVB SMALLER WITH VARIABLE BRANCHES... Potri.004G084600
[exp]
4.47 0.7865
AT3G24630 unknown protein Potri.018G082300
[exp]
12.00 0.8091
AT4G07960 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, C... Potri.005G146900
[exp]
13.60 0.8042
AT2G01060 GARP myb-like HTH transcriptional r... Potri.006G101000
[exp]
15.00 0.7790
AT5G20680 TBL16 TRICHOME BIREFRINGENCE-LIKE 16... Potri.007G104300
[exp]
19.33 0.8197
AT3G24480 Leucine-rich repeat (LRR) fami... Potri.018G075900
[exp]
28.98 0.7663
AT2G25280 unknown protein Potri.006G258200
[exp]
33.88 0.7407
AT4G12070 unknown protein Potri.018G050100
[exp]
37.13 0.7304
AT2G27080 Late embryogenesis abundant (L... Potri.004G197600
[exp]
39.68 0.7903

Potri.006G073450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.