Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28430 951 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140800 [exp] 1314 / 0 AT3G28430 1019 / 0.0 unknown protein Potri.006G204600 [exp] 218 / 9e-60 AT3G28430 285 / 3e-84 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011235 [exp] 1045 / 0 AT3G28430 1015 / 0.0 unknown protein Lus10018448 [exp] 840 / 0 AT3G28430 892 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09758 [poplar] [flax] FPL Uncharacterised conserved protein
Representative CDS sequence Show only first row Show all	>Potri.006G073600.4 pacid=42768358 polypeptide=Potri.006G073600.4.p locus=Potri.006G073600 ID=Potri.006G073600.4.v4.1 annot-version=v4.1 ATGTGGTCCTCCTTTTGGAGATCCAGAGATCGTTTCTCCTTGGATGAACTCAGATATTTAACTGACCAGCTGCAAAAGGTTCAAATTGTAAATAATGTTA ATAAGAACTTTGTAATTGAGACGTTGAGATCGATATCGGAATTAATAACATACGGAGACCAGCATGATTCGAACTATTTTGATTTTTTTATGGAAAGGCA GGTAATGGGGGAGTTTGTGAGGATACTTAAGGTTAGCAGAATTGTTTCCATTTCGCTTCAGTTGCTGCAAACAACGAGCATTATGATTCAGAACTTAAAA TCCGAGCGCGCCATACATTATATGTTCAGTAATGAGCATATTAATTTTTTGATAACTTATACGTTTGATTTTCGGAATGAGGAGTTGTTGTCATACTACA TTTCTTTCTTAAGGGCAATAAGTGGGAAGCTTGACAAGAATACAATTTCTTTGCTTGTGAAGACTCAAAATGGCACCTGGTTGGTTGTAAGTGGTTCAAG CTGGCAAGAAATGCATGGCTTGCTGCCTAAACAGCAACAAACCCTCAATCCCAAACTCGTTGGGGTTTGCTGCCTAAACAACGCTTGTTATGAAGAAGTT GTTTCTTTTCCACTGTATGTTGAGGCAATACGGTTTGCTTCCCATGAAGAGAGTATGATTCGCACTGCAGTCCGTGCTCTGACACTCAATGTCTATCATG TTGGAGATGAATCCGTGAATAGATTTGTTGCAAAGGCCCCTCATGCTGATTATTTTTCAAACTTGCTTACATTTTTTCAGAAGCAGTGCCTCTATCTAAA TGGAATGGTCTCTGAAACTCTAAAAAACCTAGACTCAGATACAACCACTGCGATTCTTAATGTTGTGGATGAAATTGAGGACAATCTCTACTATATTAGT GATGTTATTTCTGCGGGGATTCCAGAAGTTGGGAGGTTAATAACAGTCAACATTTTGCAACTTTTGATATTTCCTTTGCTTCTTCCATCTTTGCAGTTGG ATGCTGTTGATGATATTCAGATTGGTGCTATCACTTCTCTGTATTTGCTCTGTTGCATCTTACGCATAGTTAAAATCAAAGACTTGGCAAATACCATTGC TGCCTCTCTTTTCTGTCCACCGGAGGCTTTTGTTCCAGATTCTGAGACTAAACTCAATGGTCATGCGCCTGATCATGGGTATGAAATCCAACAGACAGAA AATAAGAACGTGATTGAGGTGGATGGATGTTCAAAAAAAATCTTGCCGAGCTTGTCTAGTTCTTCTCTAGTTCACCCTGAAGATATTATCTCAAAAGGTG TTTCTCGTTTAACTTTGAGGGATGCTTTACTTTCATATATTACAGCTGGAGATGATCTTCAAGTTTTGAGTTCTTTGAGCATCTTGGCTACATTGTTGCA AACAAAAGAATTAGATGAAACAATGCTAGATGCTCTTGGAATCCTCCCCCAGCGCAAGCAACACAAGAAACTCTTGCAGCAAGCATTGGTTGGTGAGGAC TTGAGGGAAGATCAACTTTTTTCGTCAGGAAGGAGCTTTATAAGAGATGGATTTAGTTGTGAGCTCGATGGCTATCTACAAAATCTCAAGGAGCAGTATG GGGTAGCATGCTCTTCCTTGGAGGTGGGAACAAGCCCCTCTGTACATAGATTTCAGGTGCTTGATGCATTGGTTAGTCTTTTTTGCCGGTCTAATATATC CCCAGAGACATTGTGGGATGGTGGTTGGCTTCTGCGTCAGCTACTTCCCTATAGTGAGTCAGGATTCAATAACCAGCATCTTGAATTACTGAGAGATTCA TATAAGAATAGCACTTATGCTCTTCTCGAGGAGGCCAGAGGTACCTGGCCCGATCTACTTGTAACAGTCTTACGCGATGAATGGAAAAGGTGCAAAAGAG CAATGGAAGCTCCATCTCCCCGGAAAGAGCTGAAGTGCATGCTCTTGCCATTAGACAAGCCCTCTTTTGATGATGTTCTTCCCAACAAATCATCTTTTGT TGCTGGTGAAAGAATGTGCAAGGTGGTGAAGGTGTTTGTACTTCTTCATCAACTTCAAATTTTCTTCCTTGGTAGGGCTTTACCTGAGCAGCCTCCTACT TGTCCTCCAAGTGATATCCCGGAAAATTCCCGTGCAAGAAATGCTGCCCTGGATGTTTCAGGTCCAAAACTAGGCTCTGAGTTGAGACTAGTTGATGCCG TGCCTTGTAGGATTGCATTTGAGAGGGGTAAGGAACGCCATTTTTGCGTTTTAGCAATCTCTGTGGGCGCATCTGGGTGGATCCTACTTGCAGAAGAACT ACCCTTGAAGAAACATTATGGAATCATCCGTGTTGTTGCTCCTTTAGCAAGTTCCGATCCTACAATTGATCAGAAGTATTCAAGATGGTTACACTTGCGA ATCCGTCCATCTACTTTACCCTTTTTGGACCCTGCTAAACTCATTACTCATGGGAAGGCCAAGACAAAAGCTCCGGTGGATGGGAGATGGACCTTATCAT TCATGGATGATGAATCTTGCAAGTCTGCTTTGTCTATGATTCTTGAGGAGATTGATCTGCAAAGCAATGAAGTCAAGAAAAGACTAAAACCATTGCTCAA CCATGAAGGAGCTATAGATGTTCCAGACGCTTCTCCACATCCTCCTGATGATGCTTCCTCATCAAATGCAACACCTTCTAATTCATTGTAA
AA sequence Show only first row Show all	>Potri.006G073600.4 pacid=42768358 polypeptide=Potri.006G073600.4.p locus=Potri.006G073600 ID=Potri.006G073600.4.v4.1 annot-version=v4.1 MWSSFWRSRDRFSLDELRYLTDQLQKVQIVNNVNKNFVIETLRSISELITYGDQHDSNYFDFFMERQVMGEFVRILKVSRIVSISLQLLQTTSIMIQNLK SERAIHYMFSNEHINFLITYTFDFRNEELLSYYISFLRAISGKLDKNTISLLVKTQNGTWLVVSGSSWQEMHGLLPKQQQTLNPKLVGVCCLNNACYEEV VSFPLYVEAIRFASHEESMIRTAVRALTLNVYHVGDESVNRFVAKAPHADYFSNLLTFFQKQCLYLNGMVSETLKNLDSDTTTAILNVVDEIEDNLYYIS DVISAGIPEVGRLITVNILQLLIFPLLLPSLQLDAVDDIQIGAITSLYLLCCILRIVKIKDLANTIAASLFCPPEAFVPDSETKLNGHAPDHGYEIQQTE NKNVIEVDGCSKKILPSLSSSSLVHPEDIISKGVSRLTLRDALLSYITAGDDLQVLSSLSILATLLQTKELDETMLDALGILPQRKQHKKLLQQALVGED LREDQLFSSGRSFIRDGFSCELDGYLQNLKEQYGVACSSLEVGTSPSVHRFQVLDALVSLFCRSNISPETLWDGGWLLRQLLPYSESGFNNQHLELLRDS YKNSTYALLEEARGTWPDLLVTVLRDEWKRCKRAMEAPSPRKELKCMLLPLDKPSFDDVLPNKSSFVAGERMCKVVKVFVLLHQLQIFFLGRALPEQPPT CPPSDIPENSRARNAALDVSGPKLGSELRLVDAVPCRIAFERGKERHFCVLAISVGASGWILLAEELPLKKHYGIIRVVAPLASSDPTIDQKYSRWLHLR IRPSTLPFLDPAKLITHGKAKTKAPVDGRWTLSFMDDESCKSALSMILEEIDLQSNEVKKRLKPLLNHEGAIDVPDASPHPPDDASSSNATPSNSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28430			unknown protein		Potri.006G073600 [exp]	0	1
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.010G210100 [exp]	3.74	0.7630
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	5.47	0.7661
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	6.92	0.7797
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	8.00	0.7705
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	8.94	0.7623
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.008G025800 [exp]	10.24	0.7402
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	10.58	0.7325
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	10.67	0.7657
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	10.72	0.7168
AT3G15280			unknown protein		Potri.001G398300 [exp]	10.81	0.7616

Compare expression of checked genes

Potri.006G073600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.