Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RHG4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23750 631 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 532 / 1e-174 TMK1 transmembrane kinase 1 (.1) AT2G01820 522 / 7e-171 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 461 / 2e-148 Leucine-rich repeat protein kinase family protein (.1) AT4G02010 258 / 7e-74 Protein kinase superfamily protein (.1) AT5G38560 256 / 1e-73 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G23540 251 / 1e-71 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 250 / 2e-71 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G76370 241 / 2e-71 Protein kinase superfamily protein (.1) AT1G20650 240 / 4e-71 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G141000 [exp] 1452 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 617 / 0 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 610 / 0 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G084000 [exp] 550 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 541 / 2e-178 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 527 / 5e-173 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 518 / 1e-169 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 488 / 8e-158 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 481 / 3e-155 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021275 [exp] 670 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 544 / 4e-179 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 542 / 4e-178 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 513 / 5e-167 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 501 / 5e-164 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10023220 [exp] 497 / 5e-161 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031944 [exp] 493 / 1e-159 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034432 [exp] 489 / 4e-158 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 485 / 8e-157 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 461 / 1e-147 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G073900.1 pacid=42769741 polypeptide=Potri.006G073900.1.p locus=Potri.006G073900 ID=Potri.006G073900.1.v4.1 annot-version=v4.1 ATGGCTGACCCTCTTCTCTCTTTCTTCCTCCTCCTCCTCTCTCTCCTCCTCTCCACCACCACAACAACCACCGCAGATGATGCAGCCACCTTTCTAAAAC TTGCCTCTGCCTTAACCCCAACACCAAAAGGCTGGTCAACAACAAACTCTAATGATTACTGCAACTGGAATGGTGTTAAATGTGACAGCTCCAACAATGT CATCTCCATTAACTTAGCTACTCAAAGTCTTTCTGGGATTCTCCCATCTGAGCTTTCAACACTTTCTCAACTCCAAAGTTTGTCTCTTCAAGAAAACAAG CTCTCTGGTGCTTTACCTTCTCTTGCAAATTTAGCATCTTTGAGAGAGATTTATATTGGTACTAATAATTTTACTAGTATCCCTCAAGATTGCTTTAAAG GGTTAACTAGTTTGCAAACTATGAGTATGAATGAGAATATTAATTTAGAATCCTGGGTTATTTCTACTGATCTAACGGAGTCGCCTAGTTTAACTACTTT TGAGGCTAGCAATGCTAAAATCTTTGGTACTATACCTGATATGTTTGCTTCTTTTCCAAGCTTGCAAAATCTTAGATTGTCTTACAATAACTTAACTGGA GGTTTGCCTCCATCTTTTGCAAATTCTGAGATCCAGAATTTGTGGCTTAATAATCAGGAAATGGGGTTGTCTGGTAATATTGAGGTGTTGTCTTCAATGG AGCAGTTGAGTCAAGTTTGGCTTCAGAAGAATCAGTTTACTGGGCCAGTTCCAGATTTGTCAAAGAGCAAGAATTTGTTTGATTTGCAGTTGAGGGATAA TCAGTTTACTGGGATCTTGCCGGTTTCTTTGCATTCCCTTCCTGGTTTGTTGAATATTTCTTTGTCTAATAATAAGTTACAAGGTCCGGTGCCTCAGTTT GGAAAAGATGTTATAGTTGATAATAGTGGTCTTAATAATTTTTGTGTGGATACTGCTGGTGTTGCTTGTGATCCACAAGTGACCACATTGCTAGAGATTG CTGGTGGTTTTGGCTATCCTGTGACGTTGTCTGATTCTTGGAAAGGGAATGATGCCTGCAGTGGTTGGCCTTTTGTTTTCTGTGATTCATCCAAAAAGAC TGTCACTACAGTGAGTTTGGGGAAGCAGCATTTTGGAGGGATAATCTCTCCTGCATTTGCTAATCTCACTGCTTTGACAACTTTGAAATTGAATGATAAC AATTTATCAGGTCCAATTCCTGATAGCTTGGCAAAGTTGTCCCAGCTTTCACTTCTTGATGTATCTAACAACAATCTTACTGGGAAGATCCCGAGTTTTG CTACTTCAGTGAAGCTAACCACTACACCAGGTAATCCTTTTCTTGGGAGTGGTGGGGTTCCTGGAAGTGGAGGGGCACCATCACCTGGTTCAGATTCAAA TACAACTGCACCTGGAGATGGTCCCAATGGAAAAGGAATTGGTGGTAAGAAGGTGAGTCCAGGTCTGATTGCTGGAATTGTTGTTGGTTTAGTGATTGTT GGTGTTATTGGCGTGTTCCTGTTGTTTAAGATTAATATCAAGAAAAAGAGAGGGAAGTCTGGGAGAGTGAATGATCAAGAGAATGGGGATGGAATCAGTG CATTGGTTACGAATGGTTCGTCGGGTTGCACGAAGGGTTATGGGGTTCTCAGTGAAATACAAAGTCAAAGTAGTGGCAACCACAGTGGCCGCAACATTTT TGAGGGTGGGAATAATGTAATTTCAATTGAGGTACTTAGACAAGTAACTGATAATTTCAGTGAGAATAACATTCTGGGCAAGGGAGGTTTTGGTGTGGTT TATAAGGGCGAATTGCATGATGGGACTAAGATTGCTGTGAAGAGGATGGAAGCTGGGGCAATGGGGACAAAAGGAATGAATGAGTTCCAGGCAGAGATTG CAGTGCTTACTAAAGTGAGGCACAGGCACTTAGTTGCTCTTTTGGGGTACTGCATAAATGGAAATGAGAGGCTCTTGGTGTACGAGTACATGCCACAGGG GAATCTGGCTCAACATTTGTTTGAATGGCAAGAACTTGGTTACCCTCCTCTTACTTGGAAACAGAGGGTTACCATTGCACTGGATGTTGCTCGAGGAGTA GAATACCTGCACAGCTTAGCACAGCAGAGTTTCATCCATAGAGATTTGAAGCCTTCAAACATACTTCTTGGAGATGACATGAGAGCTAAGGTTGCTGATT TTGGTTTGGTTAAAAATGCACCTGATGGGAATTATTCTATGGAGACAAGATTGGCAGGAACCTTTGGCTATCTTGCACCTGAATATGCTGCTACTGGACG AGTTACAACAAAAGTGGATGTATATGCTTTTGGAGTGATTTTGATGGAAATTATGACAGGAAGAAAAGCTTTAGATGATACAGTGCCAGATGAAAGGGCT CATTTGGTCACATGGTTCCGCCGAGTCCTAGTCAACAAGGACAGTCTCCCAAAGGCAATTGATCAAACTCTGAATCCTGATGAGGAGACCCTAGTGAGTA TTTTCAAAGTTGCTGAGTTAGCAGGGCATTGCACAGCTCGCGAGCCATACCAAAGACCAGATATGGGCCATGCCGTCAACGTCTTAGGACCTCTCGTAGA ACAATGGAAACCTACCAACCACGAAGAGGAAAGCACTTCTGGCATTGATCTCCACATGAGCCTTCCTCAGTTTCTCCAAAGATGGCAAGCTGATGAAGGT ACTTCGACAATGTTTAATGATAGGTCTCACTCCCAAATCCAATCAAGTATTTCGGGAGGATTTACGGACACATTTACTTCAAATGATTGTCGGTGA
AA sequence Show only first row Show all	>Potri.006G073900.1 pacid=42769741 polypeptide=Potri.006G073900.1.p locus=Potri.006G073900 ID=Potri.006G073900.1.v4.1 annot-version=v4.1 MADPLLSFFLLLLSLLLSTTTTTTADDAATFLKLASALTPTPKGWSTTNSNDYCNWNGVKCDSSNNVISINLATQSLSGILPSELSTLSQLQSLSLQENK LSGALPSLANLASLREIYIGTNNFTSIPQDCFKGLTSLQTMSMNENINLESWVISTDLTESPSLTTFEASNAKIFGTIPDMFASFPSLQNLRLSYNNLTG GLPPSFANSEIQNLWLNNQEMGLSGNIEVLSSMEQLSQVWLQKNQFTGPVPDLSKSKNLFDLQLRDNQFTGILPVSLHSLPGLLNISLSNNKLQGPVPQF GKDVIVDNSGLNNFCVDTAGVACDPQVTTLLEIAGGFGYPVTLSDSWKGNDACSGWPFVFCDSSKKTVTTVSLGKQHFGGIISPAFANLTALTTLKLNDN NLSGPIPDSLAKLSQLSLLDVSNNNLTGKIPSFATSVKLTTTPGNPFLGSGGVPGSGGAPSPGSDSNTTAPGDGPNGKGIGGKKVSPGLIAGIVVGLVIV GVIGVFLLFKINIKKKRGKSGRVNDQENGDGISALVTNGSSGCTKGYGVLSEIQSQSSGNHSGRNIFEGGNNVISIEVLRQVTDNFSENNILGKGGFGVV YKGELHDGTKIAVKRMEAGAMGTKGMNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGNLAQHLFEWQELGYPPLTWKQRVTIALDVARGV EYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGNYSMETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVILMEIMTGRKALDDTVPDERA HLVTWFRRVLVNKDSLPKAIDQTLNPDEETLVSIFKVAELAGHCTAREPYQRPDMGHAVNVLGPLVEQWKPTNHEEESTSGIDLHMSLPQFLQRWQADEG TSTMFNDRSHSQIQSSISGGFTDTFTSNDCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	0	1	RHG4.2
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	3.00	0.7567
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	4.00	0.7709	SMO1.2
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	4.24	0.8025
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.008G190800 [exp]	4.24	0.7235
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	5.19	0.7986
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	6.92	0.8152
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	7.21	0.7087
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	10.39	0.7386
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	10.95	0.7207
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	11.31	0.7259

Compare expression of checked genes

Potri.006G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.