Plant FIBer expression Database

Potri.006G074300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57140 514 / 0 ATPAP28, PAP28 purple acid phosphatase 28 (.1)
AT5G63140 359 / 6e-122 ATPAP29, PAP29 purple acid phosphatase 29 (.1)
AT2G46880 293 / 3e-96 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2)
AT3G10150 101 / 1e-23 ATPAP16, PAP16 purple acid phosphatase 16 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G074500
[exp]
606 / 0 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1)
Potri.002G183000
[exp]
373 / 3e-127 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1)
Potri.002G183200
[exp]
370 / 2e-126 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1)
Potri.014G109100
[exp]
367 / 4e-125 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1)
Potri.016G042500
[exp]
112 / 3e-27 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027596
[exp]
552 / 0 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1)
Lus10022947
[exp]
546 / 0 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1)
Lus10010289
[exp]
362 / 8e-123 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1)
Lus10009863
[exp]
360 / 1e-122 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1)
Lus10018030
[exp]
110 / 2e-26 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1)
Lus10031039
[exp]
92 / 5e-20 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.006G074300.3 pacid=42770514 polypeptide=Potri.006G074300.3.p locus=Potri.006G074300 ID=Potri.006G074300.3.v4.1 annot-version=v4.1
ATGAACAAAACCATGGAAGGGCTCTACTCTCTTCTTTATTTAATCTTAATCTTGACAATCCTCTTCTCTCTACACACCCAGATCGCTCACAAATTACTTA
TAGGCCACCACCCTCTTCACCTCAAGAAATCCCCACATCTCCCTCTCAGGTTCAGCTCTGATGGAACCTTCAAAATCCTTCAGGTGGCTGATATGCATTA
TGGAACTGGGGTGCTGACAAGTTGCAAAGATGTGTTAGCTTCTGAGTTTCATTATTGTTCTGATCTTAACACCACTCATTTTCTTAAGAGGATCATTGAA
GCCGAGAAGCCTGATTTCATTGCTTTTACAGGAGATAATATATTTGGTTCAAGCACTCCTGATGCTGCTGAATCTTTGCTTCGTGCCTTTGCACCTGCCA
TGGAATCTGGACTTCCATGGGCAGCGGTTTTAGGAAACCATGACCAAGAATCTACCATGACTCGACTAGAATTGATGTCTTTCATATCACTATTGGATTA
CTCAGTATCACAAACCAATCCATCAGTGGAAGATGCTTCTAGTGCAGCCAAAGGCGATACGATAACAGATATTGATGGCTTTGGAAATTATAATCTCAGG
GTATATGGTGCTCCAGGTTCACATTCAGCTAATAGAACTGTTCTTGATCTTTTCTTTCTTGACAGTGGAGACAGGGAGGTTGTTCAAGGAGTTAGAACTT
ATGGATGGATTAAGGAATCTCAACTTCGTTGGCTTCATGGTGTTTCCAAGGGTTATCAGGACCGAAAGGAGGACTGTCATCTCCTGGAAGGGGCTTCACC
ATCAGCTACACCCACACACTGTGCATTGGCATTTTTCCATATCCCAATTCCAGAAATTCGACAGCTATACTACCAAAAGATTATTGGCCAGTTTCAGGAA
GGTGTGGCTTGCTCATCAGTTAACTCAGGAGTCTTACAGACCCTTGTATCCATGGGAGATGTGAAGGCTGTGTTCATGGGCCATGATCACAAGAATGACT
TTTGTGGGAATTTAGAAGGTATATGGTTTTGTTATGGTGGAGGCTTTGGGTATCATGCTTATGGAATAGCTGGGTGGTCAAGGAGAGCAAGGATCATATT
AGCAGAACTTGAAAAGGGTGAGAAGTCTTGGATGGGAATGGAGAGGATCAGGACATGGAAGCGTCTTGATGATGAGAAGTTGAGCAAGCTTGATGAACAA
GTCTTGTGGGAATTACACCATGCAAAATGA
AA sequence
>Potri.006G074300.3 pacid=42770514 polypeptide=Potri.006G074300.3.p locus=Potri.006G074300 ID=Potri.006G074300.3.v4.1 annot-version=v4.1
MNKTMEGLYSLLYLILILTILFSLHTQIAHKLLIGHHPLHLKKSPHLPLRFSSDGTFKILQVADMHYGTGVLTSCKDVLASEFHYCSDLNTTHFLKRIIE
AEKPDFIAFTGDNIFGSSTPDAAESLLRAFAPAMESGLPWAAVLGNHDQESTMTRLELMSFISLLDYSVSQTNPSVEDASSAAKGDTITDIDGFGNYNLR
VYGAPGSHSANRTVLDLFFLDSGDREVVQGVRTYGWIKESQLRWLHGVSKGYQDRKEDCHLLEGASPSATPTHCALAFFHIPIPEIRQLYYQKIIGQFQE
GVACSSVNSGVLQTLVSMGDVKAVFMGHDHKNDFCGNLEGIWFCYGGGFGYHAYGIAGWSRRARIILAELEKGEKSWMGMERIRTWKRLDDEKLSKLDEQ
VLWELHHAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Potri.006G074300
[exp]
0 1
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G149800
[exp]
3.31 0.8356
AT3G30841 Cofactor-independent phosphogl... Potri.017G109500
[exp]
9.79 0.7927
AT5G05460 AtENGase85A Endo-beta-N-acetyglucosaminida... Potri.010G184300
[exp]
13.41 0.7774
AT1G02060 Tetratricopeptide repeat (TPR)... Potri.014G056400
[exp]
15.96 0.7845
AT3G25890 AP2_ERF CRF11 cytokinin response factor 11, ... Potri.010G125600
[exp]
16.73 0.7597
AT1G25472 CPuORF54 conserved peptide upstream ope... Potri.010G125700
[exp]
20.00 0.7814
AT1G75210 HAD-superfamily hydrolase, sub... Potri.014G196700
[exp]
20.19 0.7958
AT1G24340 EMB260, EMB2421 EMBRYO DEFECTIVE 260, EMBRYO D... Potri.008G178400
[exp]
20.49 0.7735
AT5G20990 B73, CNX1, SIR4... SIRTINOL 4, CO-FACTOR FOR NITR... Potri.009G156400
[exp]
26.22 0.7691
AT1G80350 FTR, FRC2, FRA2... KATANIN 1, FAT ROOT, FURCA2, F... Potri.001G176900
[exp]
27.34 0.7070 Pt-BOT1.1

Potri.006G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.