Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1243 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1187 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1160 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 1155 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 1140 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 929 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 910 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 897 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 871 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G27940 870 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G141400 [exp] 2107 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1791 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1648 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 1228 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 1222 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1217 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 1180 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1110 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 944 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039458 [exp] 1250 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 1242 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 1234 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 1221 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1218 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 1191 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1150 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10012959 [exp] 1067 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 929 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10005249 [exp] 918 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.006G074400.4 pacid=42767630 polypeptide=Potri.006G074400.4.p locus=Potri.006G074400 ID=Potri.006G074400.4.v4.1 annot-version=v4.1 ATGGCAGCTGAGCTCAGTCGGGATGAAGCGAAGAGAAAAACAAGTGATGCCTCATCTGGATCATTGCAGACTGTATTGAAGCAGTCAGATTGGATGGATA TGTTGCTGATGGCACTTGGATCAATGGGGAGTGTTGCAGATGGATCATCTATGGCAATAATCATGATAATTCTCTGTGACCTCATGAACAAATACAGTGG TACTTCTGTCACTATTGAAGAGATAAACAAGTTTGCTTTGACCTTAACTTATGTTGCTGTTGGGGTGGCTTCAGCCTCCTTTCTTGAAGGATTCTGCTGG GCACGCACGGCCGAAAGGCAAACCTTTCGACTTCGCAGGCAATATTTACAAGCAGTGTTGAGGCAAGATGTTGGCTTCTTTGACACAAATCAGGGTGCAT CGCTCGCTTCTCAAGTAGTCTCCAATATTTCAGTTAACACACTTACCATACAAGGAGTTCTTTCAGAGAAGATAGCCAATTTCATTTCAAACATAACAAC GTTCATCACAGGCCAGGCGGCAGCATTATACCTCAGCTGGAGACTAGCTATAGTTGCTATTCCTGCATTGTTAATGTTGATCATTCCAGGATTGGTATAT GGGAAGCTTCTAGGTGAGGTTGGAAAGAAGATCCAAGAAGCTTATGGAGTTGCAGGAGGGATAGTGGAGCAAGCAGTGTCATCAATCAGGACTGTTTATT CCTATGTTGCAGAGGAAAGGACAGCCAAGGATTATAAGAATGCATTGAAACCAGCTTTAGAGCTAGGGATCAAACAAGGATTGATGAAAGGTATGGCCAT CGGTACGGTTGGCATTACATTTGCAGTTTGGGCTCTTCAAGGCTGGTATGGAAGCACCCTGGTTATAAACAGAGGAGCCAAAGGCGGAAATGTTTTCACA GCTGGATTGTGTATTATATATGGAGGACTTTCTCTGGGTGGTTCTCTAATCAATGTGAAGTACTTCATAGAGGCAAATATTGCTGCTGCTCGAATATTTG AGATGATTCATCGTGTCCCAGGAATTGACTCTGCAGATGAACAAGGCAAAACCATATCAGATGTCAAAGGTGAAGTGGAGTTCAGAGACATAGAGTTTGA GTATCCTTCAAGACCAGGGAGCCTGGTATTAAACAAATTTAATCTTAAAGTTATGTCTGGCCAGACTGTTGGTTTGGTAGGCACTAGTGGATCAGGCAAA TCAACAGTTATAAATTTGCTTGAGAGATTTTATGAACCTCTTAGGGGTGATATCCTCCTGGATGGTGTTGACATAAAGACCCTTCAGCTGAAATGGTTGC GGAATCAAATGGGGCTAGTAACCCAGGAGCCTGTACTTTTTGCAACCTCAATCAAAGAAAACATTCTTTTTGGAAAAGAGGATGCTTCTATGGAGGAGGT AATCAGAGCAGCCAAAGCTGCTAATGCTCACAACTTCATCAATAAACTCTCTGAAAAATACAACACTCTGGTGGGACAAATGGGAACTCAAATGTCTGAA GGGCAGAAACAAAGGATTTCCATTGCAAGGGCACTGTTGAGGAACCCAAAAATTCTTCTTCTCGATGAAGCAACGAGTGCACTGGATTCAATTTCTGAAA AGGCCGTCCAGGATGCTTTGAATCAGGCATCAATAGGTCGAACAACTATCATCATCGCACACCACTTGTCTGCTCTCCGCAATGCTGACTTAATTGCTGT TATTCAGTCTGGACAAGTGGGAGAATTTGGCTCACACGAACAACTTATACAAAACTCAAGTGGTACATATGCAGTAATGGTGAAGCTGCAGAGGACATAC ATGAATGATGAAGTTCTGTTGGAAGCTGAAGATACAGAGGATGGAAGTGCTTTTCCTGTTCATGATGGAACCATTCGGGTTGGGGAAACACCTGACAAGT CTCTCTCTCGAAATTCTAGTTTTGGCATGATAACCAACCAGCAGCAAGAAGATGACAGTTCCCCAAATTTAAGGCAACTGATAAGCATGACAGCACCTGA GTGGAAGTCAACTCTATTAGGCTGTGTTGGAGCTCTTGGCTATGGATTAATTCCGCCATTGAACTCATTCTGTCTTGGTGCGCTTCTAGCAGTATACTTT GAAAATGATCATACCGAGATAAGGTCTCAAACAAGAATCTATTGCTTTGCATTCTTGGCCTTTGCTGTCTTTACTTTTCTGACAAACGTGATTCAGCATT ACTATTTTGGGATAATGGGAGAGAAATTGACAGAAAGAGTTAGGGAGGCAGTTTTTGAGAAAATCTTGACGTTTGAGATTGAATGGTTTGATCAAGAAAA CAACAGCAGTGGGGCTATATGTGCAAGATTGGCCACAGACGCGGTAATGGTGAGAACTCTTGTCACCGATCGATTGTCATTGCTGACTCAGGCAGTTTCA TCAGCGACATTGGCTGTTGTCTTAGCTTTGATGTTGTCTTGGCGACTTGCACTAGTAGCTATTGCCCTGGAACCAGGTGTCATAGCTGCCGTCTATCTTA GAGAAATGACAATGCGAATAATGTCTAAGAAAATTCTCAAAGCACAGAGTGAGAGTAGTGAGTTGGCTAGTGAGGCTTTTGGAAACCACAAAATCATCAC GGCATTTGGCTCTCAGGAAAAGGTTCTGAAACTATATGACCGTACACAGGTAAGCTCCAAGAAAGAAAGCAACAAGCAATCTTGGTATGCAGGGGTTGGA TTGTTTGTCTCACAGTTTCTCACAAGTGCCCTTATAGCTGTAATTTGCTGGTATGGTGGGAAGCTGTTATTCCAAAAAAAGATAACATACAAGCACCTCT TTCAAATATTTTTCATTTTGGTGTCAACAGGGAGAGTTATAGCGGAGACTGCTAGTATGACAGCTGACCTATCAAAGGGAACCAGTGCACTGAAGTCAGT TTTTCAGATTCTACAAAGAGAGACTAAAATGGACCCTGAGAATCCAGATGGTATCAAGACAGAAAAAATTAATGGAGAAATAGAGTTTAAGCAGGTGTAT TTCATCTACCCAGCAAGACCAAAACAGATCATTTTGAGGGGATTAGACCTAAAAATTGAAGCTGCAAAGTTTGTTGCATTGGTTGGAAGAAGTGGATCTG GAAAATCCACCATCATCAGATTGATTGAGGGATTTTATGACACATTGAGTGGTTCAATTGAAGTTGATGGAATCGACATCATGCGCTATAATTTAAGGGC TTTGAGGTCACATATAGCGTTGGTAAGTCAAGAACCAACTCTTTTTGCAGGAACAATACGCGACAACATTGCATATGCAAAACAAAATGCAACTGAAGCA GAGATAATTGAAGCATCAAGCATTGCGAATGCTCATGAATTTATAAGCTCCCTGAGGGATGGATATGAGACCTACTGCGGAGAAAGAGGTGTGCAACTAT CAGGAGGGCAAAAGCAAAGAATAGCGCTTGCTCGAGCCATATTAAAAAATCCTGCAATACTTCTCTTGGATGAGGCAACAAGTGCACTAGATGTTAATTC AGAGAAACTTGTTCAAGAGGCACTAGAGAGGACCATGTCAGGCAGGACAAGCCTAGTTTTGGCTCATCGATTGTCGACAATTCAGAAAGCTGATAAAATA GTAGTCATTGATAAAGGGAGGGTCATAGAAGAGGGAAATCACAGTGAGCTTCTTGCTCTAGGAGAAAAGGGTGCATACTATGCACTTGTAAAACTCCAAC AACTTTCTGTCATTTGA
AA sequence Show only first row Show all	>Potri.006G074400.4 pacid=42767630 polypeptide=Potri.006G074400.4.p locus=Potri.006G074400 ID=Potri.006G074400.4.v4.1 annot-version=v4.1 MAAELSRDEAKRKTSDASSGSLQTVLKQSDWMDMLLMALGSMGSVADGSSMAIIMIILCDLMNKYSGTSVTIEEINKFALTLTYVAVGVASASFLEGFCW ARTAERQTFRLRRQYLQAVLRQDVGFFDTNQGASLASQVVSNISVNTLTIQGVLSEKIANFISNITTFITGQAAALYLSWRLAIVAIPALLMLIIPGLVY GKLLGEVGKKIQEAYGVAGGIVEQAVSSIRTVYSYVAEERTAKDYKNALKPALELGIKQGLMKGMAIGTVGITFAVWALQGWYGSTLVINRGAKGGNVFT AGLCIIYGGLSLGGSLINVKYFIEANIAAARIFEMIHRVPGIDSADEQGKTISDVKGEVEFRDIEFEYPSRPGSLVLNKFNLKVMSGQTVGLVGTSGSGK STVINLLERFYEPLRGDILLDGVDIKTLQLKWLRNQMGLVTQEPVLFATSIKENILFGKEDASMEEVIRAAKAANAHNFINKLSEKYNTLVGQMGTQMSE GQKQRISIARALLRNPKILLLDEATSALDSISEKAVQDALNQASIGRTTIIIAHHLSALRNADLIAVIQSGQVGEFGSHEQLIQNSSGTYAVMVKLQRTY MNDEVLLEAEDTEDGSAFPVHDGTIRVGETPDKSLSRNSSFGMITNQQQEDDSSPNLRQLISMTAPEWKSTLLGCVGALGYGLIPPLNSFCLGALLAVYF ENDHTEIRSQTRIYCFAFLAFAVFTFLTNVIQHYYFGIMGEKLTERVREAVFEKILTFEIEWFDQENNSSGAICARLATDAVMVRTLVTDRLSLLTQAVS SATLAVVLALMLSWRLALVAIALEPGVIAAVYLREMTMRIMSKKILKAQSESSELASEAFGNHKIITAFGSQEKVLKLYDRTQVSSKKESNKQSWYAGVG LFVSQFLTSALIAVICWYGGKLLFQKKITYKHLFQIFFILVSTGRVIAETASMTADLSKGTSALKSVFQILQRETKMDPENPDGIKTEKINGEIEFKQVY FIYPARPKQIILRGLDLKIEAAKFVALVGRSGSGKSTIIRLIEGFYDTLSGSIEVDGIDIMRYNLRALRSHIALVSQEPTLFAGTIRDNIAYAKQNATEA EIIEASSIANAHEFISSLRDGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDVNSEKLVQEALERTMSGRTSLVLAHRLSTIQKADKI VVIDKGRVIEEGNHSELLALGEKGAYYALVKLQQLSVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074400 [exp]	0	1
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	11.78	0.7848	Pt-ALA9.2
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Potri.006G046500 [exp]	21.14	0.7761
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.008G096400 [exp]	22.44	0.7634	Pt-RPK1.1
AT1G15780			unknown protein		Potri.003G012400 [exp]	22.62	0.7845
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	27.65	0.7451
AT1G33260			Protein kinase superfamily pro...		Potri.001G454800 [exp]	35.49	0.6858
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Potri.003G133300 [exp]	45.82	0.7157	F.1
AT4G01290			unknown protein		Potri.002G163000 [exp]	47.32	0.7622
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.002G088900 [exp]	48.63	0.7137	Pt-MEKK1.2
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	53.37	0.7508

Compare expression of checked genes

Potri.006G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.