Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57140 485 / 2e-171 ATPAP28, PAP28 purple acid phosphatase 28 (.1) AT5G63140 326 / 6e-109 ATPAP29, PAP29 purple acid phosphatase 29 (.1) AT2G46880 303 / 4e-100 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2) AT3G10150 88 / 4e-19 ATPAP16, PAP16 purple acid phosphatase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G074300 [exp] 602 / 0 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1) Potri.002G183000 [exp] 335 / 2e-112 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1) Potri.014G109100 [exp] 333 / 6e-112 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1) Potri.002G183200 [exp] 333 / 1e-111 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1) Potri.016G042500 [exp] 96 / 2e-21 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027596 [exp] 555 / 0 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1) Lus10022947 [exp] 550 / 0 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1) Lus10010289 [exp] 330 / 2e-110 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1) Lus10009863 [exp] 321 / 3e-107 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1) Lus10018030 [exp] 97 / 8e-22 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1) Lus10031039 [exp] 72 / 2e-13 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.006G074500.1 pacid=42768754 polypeptide=Potri.006G074500.1.p locus=Potri.006G074500 ID=Potri.006G074500.1.v4.1 annot-version=v4.1 ATGAGCAAAACCATGGAAGGACTCTATTCTCTTCTCTATCTAACCTTAGTCTTTACAATCCTCTTCACTCTACACACCCAGATTGCTCACAAATTACTCG TAGGCCACCACCCTCTTCACCTCAAGAAATCCCCACATCTCCCTCTCAGGTTCAATTCTGATGGCACCTTCAAAATCCTTCAGGTGGCTGATATGCATTA CGGAACTGGGATGCTGACACGGTGTAGAGATGTGTTAGCTTCTGAGTTTGATTACTGTTCTGATTTGAACACCACTCGTTTTCTTAAGAGGATCATTCAA TCTGAGAAGCCTGATTTCATTGCTTTTACAGGAGATAACATATTTGGACCAAGCACTCATGATGCTGCAGAATCTCTGCTTCGTGCCTTTGGTCCTGCCA TGGATTCTGGACTTCCATGGGCTGCAGTTTTAGGAAACCATGACCAAGAATCAACAATGACTCGAGAAGAATTAATGTCTTTCATATCCTTGATGGATTA CTCAGTCTCACAAACCAATCAACCTGTGGATGATCTCTCTAGCGCTGCTGAAGGAGACGTGACAAAAAATATTGATGGATTTGGGAATTATAACCTCAGA GTATATGGTGCCCCAGGTTCCCATTTGGCAAACAGAAGTGTCCTCAATCTTTTCTTTCTTGACAGTGGAGACAGAGAGGTGGTTCAAGGAATTCGAACTT ATGGATGGATTAAGGAATCTCAGCTTCGTTGGCTTCGTAGTGTTTCTAAGGGATATCAGGGCCAAAGGCAGGATAATAATCACTTGGAAGAGGCTTCAGT TTGTGCTATACCCCCTGCAATGGTTTTTTTCCATATCCCAATTCCAGAAATTCAGCAGCTATACAACCAACAGATTGTTGGCAAGTTTCAGCAACGTGTA TCTTGTTCATCAATGAACTCAGGAGTCTTACAGACCATTATATCCATGGGAGTTGTAAAGGCTGTGTTCGTGGGCCATGATCACACCAATGACTTTTGTG GGAATTTAGAAGGTATATGGTTTTGTTACGGGGGAGGATTTGGTTATCACGGTTATGGAAAGGCCGGATGGCCACGTAGAGCAAGGATCATATTAGCAGA ACTTGAGAAGGGTGAGAAGTCCTGGATGGGGGTGGAGAGGATCAGTACGTGGAAGCGCCTTGATGATGAGAAGCTGAGTAAGCTTGATGAACAAGTCTTA TGGCAATCACACCCGTCATTCAAGATGACTTGA
AA sequence Show only first row Show all	>Potri.006G074500.1 pacid=42768754 polypeptide=Potri.006G074500.1.p locus=Potri.006G074500 ID=Potri.006G074500.1.v4.1 annot-version=v4.1 MSKTMEGLYSLLYLTLVFTILFTLHTQIAHKLLVGHHPLHLKKSPHLPLRFNSDGTFKILQVADMHYGTGMLTRCRDVLASEFDYCSDLNTTRFLKRIIQ SEKPDFIAFTGDNIFGPSTHDAAESLLRAFGPAMDSGLPWAAVLGNHDQESTMTREELMSFISLMDYSVSQTNQPVDDLSSAAEGDVTKNIDGFGNYNLR VYGAPGSHLANRSVLNLFFLDSGDREVVQGIRTYGWIKESQLRWLRSVSKGYQGQRQDNNHLEEASVCAIPPAMVFFHIPIPEIQQLYNQQIVGKFQQRV SCSSMNSGVLQTIISMGVVKAVFVGHDHTNDFCGNLEGIWFCYGGGFGYHGYGKAGWPRRARIILAELEKGEKSWMGVERISTWKRLDDEKLSKLDEQVL WQSHPSFKMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Potri.006G074500 [exp]	0	1
AT3G15110			unknown protein		Potri.001G372850 [exp]	8.71	0.7636
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	21.72	0.7592
AT1G11360			Adenine nucleotide alpha hydro...		Potri.011G039800 [exp]	23.45	0.7484
AT1G09660			RNA-binding KH domain-containi...		Potri.003G005500 [exp]	24.37	0.7256
AT5G46030			unknown protein		Potri.011G097300 [exp]	30.29	0.7560
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.013G152100 [exp]	34.39	0.7446
AT4G19140			unknown protein		Potri.001G130900 [exp]	36.76	0.7528
AT3G05700			Drought-responsive family prot...		Potri.013G011200 [exp]	37.46	0.7469
AT5G05230			RING/U-box superfamily protein...		Potri.019G058300 [exp]	39.11	0.7390
AT3G52220			unknown protein		Potri.008G019100 [exp]	42.21	0.7499

Compare expression of checked genes

Potri.006G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.