Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57150 180 / 1e-56 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29930 161 / 5e-49 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 77 / 7e-16 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G28160 64 / 7e-12 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT1G63650 62 / 6e-11 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G22760 61 / 7e-11 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G16430 61 / 1e-10 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 61 / 1e-10 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 61 / 2e-10 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G10610 60 / 3e-10 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G141700 [exp] 331 / 9e-116 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074700 [exp] 321 / 1e-111 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141600 [exp] 268 / 6e-91 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141500 [exp] 265 / 1e-89 AT5G57150 214 / 1e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074600 [exp] 261 / 2e-87 AT5G57150 168 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141800 [exp] 238 / 8e-79 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 230 / 7e-76 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G136300 [exp] 80 / 5e-17 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 75 / 2e-15 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006951 [exp] 209 / 5e-68 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10016151 [exp] 71 / 6e-14 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10030609 [exp] 69 / 2e-13 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030880 [exp] 69 / 2e-13 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021416 [exp] 63 / 4e-12 AT2G28160 191 / 7e-61 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10036068 [exp] 59 / 1e-10 AT5G57150 79 / 3e-18 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018787 [exp] 58 / 1e-09 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024871 [exp] 58 / 2e-09 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10032542 [exp] 57 / 3e-09 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10043199 [exp] 57 / 3e-09 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G074800.1 pacid=42769473 polypeptide=Potri.006G074800.1.p locus=Potri.006G074800 ID=Potri.006G074800.1.v4.1 annot-version=v4.1 ATGGATATCATTGAAAATATTGGAGAGTACCAAAATTACTGGGAAACTAGCTTGTTTTGGAACGAAGAGCTTAATTATAGTTGGGCAACGAATCAGCAAT CTAATCTCGGGTACTATGCTTCAAGTTTGCCGGAGGGAACTGCTTCACCAATAAGAACTAAAAATATTGCTTTGGAGACGAACAAGAGGAAGGAGCTCAA TGACAAGCTCTTGGCACTTAGAGAAGCAGTCCCCAAAATCAGCAAGTTGGACAAGGCTTCCATAATCAAAGATGCTATTGGGTACATCCAAGACTTGCAA GAACAAGAGAGGATACTCCAAGCGGAGATAAGGGAGCATGAATCCAAAAGATTGAAGAAACATCCTGATTCTGGCTTTGAGCAAGAGCTACCAGACTTGT TAAGATCCAAGAGAACAAGATATGACAAAATTTATCATCACAGTTTGGGCAGAAGTACTTGTCCAATTCAAGTTCATGAACTTGCTATTACGTCTATGGG AGAGAATACATTGTTAGTGAGCTTAGCATGTAATAAAACAACAGACGCAATGACTAGGATCTGTGAGGTTTTTGAATCTTTGAAGCTAAAAATTATCACA GCAAATGCCACAGTTCTCTCAGGGATGATAAAGAAGACAGTCGTGATAGAGGTCGATGAAGAAGAGAAAGAGCATCTGAAGATAAAAATTGAAAGAGCTG TTTCAGCTCTTAGATCCCCACATACAGTCCAGTGA
AA sequence Show only first row Show all	>Potri.006G074800.1 pacid=42769473 polypeptide=Potri.006G074800.1.p locus=Potri.006G074800 ID=Potri.006G074800.1.v4.1 annot-version=v4.1 MDIIENIGEYQNYWETSLFWNEELNYSWATNQQSNLGYYASSLPEGTASPIRTKNIALETNKRKELNDKLLALREAVPKISKLDKASIIKDAIGYIQDLQ EQERILQAEIREHESKRLKKHPDSGFEQELPDLLRSKRTRYDKIYHHSLGRSTCPIQVHELAITSMGENTLLVSLACNKTTDAMTRICEVFESLKLKIIT ANATVLSGMIKKTVVIEVDEEEKEHLKIKIERAVSALRSPHTVQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074800 [exp]	0	1
AT5G66590			CAP (Cysteine-rich secretory p...		Potri.005G130100 [exp]	1.41	0.8202
AT5G55690	MADS		MADS-box transcription factor ...		Potri.012G109900 [exp]	4.47	0.8018
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.002G102900 [exp]	10.04	0.8280
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Potri.015G058800 [exp]	12.80	0.8024
AT1G29720			Leucine-rich repeat transmembr...		Potri.011G072941 [exp]	17.02	0.7835
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Potri.008G133800 [exp]	17.34	0.7949	Pt-CABP1.1
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.007G143800 [exp]	17.88	0.7681
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048800 [exp]	20.78	0.7496
AT4G24275			unknown protein		Potri.003G006100 [exp]	27.71	0.7891
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073241 [exp]	33.40	0.7778

Compare expression of checked genes

Potri.006G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.