Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57180 267 / 7e-85 CIA2 chloroplast import apparatus 2 (.1.2.3) AT4G25990 224 / 6e-69 CIL CCT motif family protein (.1.2) AT1G07050 94 / 4e-22 CCT motif family protein (.1) AT5G14370 90 / 1e-19 CCT motif family protein (.1) AT1G73870 89 / 4e-19 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G25440 89 / 7e-19 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G68520 88 / 7e-19 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G49130 81 / 1e-16 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT2G24790 62 / 2e-10 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G57660 61 / 4e-10 CO COL5, ATCOL5 CONSTANS-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142100 [exp] 594 / 0 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.001G281700 [exp] 100 / 2e-24 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.015G054600 [exp] 92 / 7e-20 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.009G077100 [exp] 86 / 2e-19 AT1G07050 119 / 3e-34 CCT motif family protein (.1) Potri.010G125100 [exp] 89 / 9e-19 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.008G120400 [exp] 88 / 1e-18 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.001G339200 [exp] 83 / 2e-17 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.006G173600 [exp] 66 / 1e-11 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.018G096084 [exp] 64 / 7e-11 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020012 [exp] 115 / 3e-27 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10015330 [exp] 104 / 1e-24 AT5G57180 136 / 1e-36 chloroplast import apparatus 2 (.1.2.3) Lus10015538 [exp] 105 / 2e-24 AT5G57180 130 / 8e-34 chloroplast import apparatus 2 (.1.2.3) Lus10025459 [exp] 89 / 3e-19 AT5G57180 138 / 2e-37 chloroplast import apparatus 2 (.1.2.3) Lus10014886 [exp] 68 / 5e-12 AT5G14370 152 / 3e-42 CCT motif family protein (.1) Lus10041449 [exp] 68 / 6e-12 AT1G25440 288 / 4e-93 B-box type zinc finger protein with CCT domain (.1) Lus10022311 [exp] 66 / 2e-11 AT5G14370 141 / 1e-38 CCT motif family protein (.1) Lus10026238 [exp] 62 / 1e-10 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10042431 [exp] 60 / 4e-10 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10023229 [exp] 61 / 1e-09 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G075200.5 pacid=42767119 polypeptide=Potri.006G075200.5.p locus=Potri.006G075200 ID=Potri.006G075200.5.v4.1 annot-version=v4.1 ATGTCTTCTCCATGTATAAGTGGAGGTGGTAGAACCTATGGATTTGATTTAGAAATAGTCAAATCCTCATCTACTTCCTCAACAAGAACATCACACACAT CTTCGCCATCTTCAACTATCTCTGAATCTAGCAATTCCCCGTTAGCAATCTCAACAAGAAAATCAAGAACTCCTCGTAAAAGGCCTAATCAAACTTACAA TGAAGCAGCTGCTCTTCTTTCCACTGCCTATCCAAACATTTTCTCCACCAAACACCTCACAAAATCTAGCAAATTCACCAAACCCCAGGACAACAGCCTC CTCCTTGACCAATCCTCCGACTTGTTATTGCCTTTTCGCGTCTTCGACAACTCTGGATTCCTAATTCACCAACCAATCCAAGGAAAGCCCAGTTATGGAA ACGAGTCGAGATTTGCGAATTTTACAGATAAGTCCTCTTGCCAGAGCAGCGGGGAAGTTGATTTCCACGGGAATTCAGTGGAATTGTGTGATGGACTCGA TGAGGATTTCGACGCGGAATCCATTCTTGATGAGGAATTTGAGGAGGGTATTGATAGTATTATGGGGCATTCAAGTATAGGCAATGAAATGGTTGACGAG GTGCCTAATGGCATTAGTTCTAGTTTTGGTGGTCAAATGAATTCTTGGTATGGGAGTTCAATGGGATATAATTTTGGCGGGAAATCACAATATGGTCATG GGATTGCAATGAGAAGAGGTGTTAGAGCTTTGAGGCATGTTGATGAAGGAAATTGGTGGGATTTTCCAATTGTTGATATGTTACAAATCTCTCCAAGACT CACCACCACCGTGGCCGCCACCGCAAATGCCAATAGCAACAATGGTCCAGAATGCAATTCAATTCCAAAGCCAAAGCCAAAACCAAAGTTGAAATTGAAA CCCAATTCGAGCAGCGAAAAGAAGAAAAAGAAAGTAGAGAAACCAGCTGTGATGGAAGAGAAGAATGTGGAGTTGAAAGATGAAAATCCAGTCAAGGAGA ATTCTATTCCACAATCCAGTCAAGGGTTGATATTGAAATTGAATTACGACCATGTCTTGAGCGAGTGGTCCGACCGTGGCTCGCCCTTTTCCGACGAAAG TATGGGGTGTGCTGAAGGAAATGATGTCTCTGCCAGGCTGGCACAGATTGATTTATTCTCAGAGAATGGAATGAGAGAAGCTAGCGTCCTGCGCTACAAA GAAAAGCGGCGTACACGCCTTTTCTCTAAGAAGATCAGATACCAGGTCAGAAAAGTCAACGCTGATCAACGGCCCAGAATGAAGGGAAGATTTGTGAGAA GGCCGAATCCAAGAAGTGATGAACAAGAGAAGAAGAAGAAGCTGTGA
AA sequence Show only first row Show all	>Potri.006G075200.5 pacid=42767119 polypeptide=Potri.006G075200.5.p locus=Potri.006G075200 ID=Potri.006G075200.5.v4.1 annot-version=v4.1 MSSPCISGGGRTYGFDLEIVKSSSTSSTRTSHTSSPSSTISESSNSPLAISTRKSRTPRKRPNQTYNEAAALLSTAYPNIFSTKHLTKSSKFTKPQDNSL LLDQSSDLLLPFRVFDNSGFLIHQPIQGKPSYGNESRFANFTDKSSCQSSGEVDFHGNSVELCDGLDEDFDAESILDEEFEEGIDSIMGHSSIGNEMVDE VPNGISSSFGGQMNSWYGSSMGYNFGGKSQYGHGIAMRRGVRALRHVDEGNWWDFPIVDMLQISPRLTTTVAATANANSNNGPECNSIPKPKPKPKLKLK PNSSSEKKKKKVEKPAVMEEKNVELKDENPVKENSIPQSSQGLILKLNYDHVLSEWSDRGSPFSDESMGCAEGNDVSARLAQIDLFSENGMREASVLRYK EKRRTRLFSKKIRYQVRKVNADQRPRMKGRFVRRPNPRSDEQEKKKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.006G075200 [exp]	0	1
AT3G11420			Protein of unknown function (D...		Potri.010G199900 [exp]	1.73	0.9620
AT1G22160			Protein of unknown function (D...		Potri.002G092900 [exp]	3.46	0.9571
AT3G46750			unknown protein		Potri.001G243900 [exp]	6.32	0.9499
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	6.63	0.9541
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	6.70	0.9446
AT3G61320			Bestrophin-like protein (.1)		Potri.014G082900 [exp]	7.93	0.9571
AT5G09960			unknown protein		Potri.007G080800 [exp]	10.19	0.9454
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.017G094800 [exp]	11.95	0.9396
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Potri.001G348300 [exp]	13.26	0.9418
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016400 [exp]	13.41	0.9375

Compare expression of checked genes

Potri.006G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.