Plant FIBer expression Database

Potri.006G075300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48175 227 / 1e-76 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
AT1G68720 64 / 8e-12 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
AT5G28050 44 / 2e-05 Cytidine/deoxycytidylate deaminase family protein (.1.2)
AT5G24670 40 / 0.0004 TAD3, EMB2820 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111100
[exp]
65 / 3e-12 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Potri.010G132600
[exp]
64 / 8e-12 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Potri.013G094800
[exp]
40 / 0.0005 AT5G24670 411 / 3e-142 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028482
[exp]
261 / 1e-89 AT1G48175 269 / 5e-93 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Lus10009163
[exp]
256 / 6e-88 AT1G48175 265 / 1e-91 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Lus10034402
[exp]
61 / 5e-11 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Lus10019153
[exp]
61 / 8e-11 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence
>Potri.006G075300.4 pacid=42769085 polypeptide=Potri.006G075300.4.p locus=Potri.006G075300 ID=Potri.006G075300.4.v4.1 annot-version=v4.1
ATGGATTCTCATGTGGAAGAAGGGTGTTCTTCTGAGACTTTGGCATTCATGGAGCTTGCTATAGAACAGGCGGAAGATGCTCTGAACAGCCTTGAAGTGC
CAGTCGGTTGTGTTATTGTTGAAGATGGGAAGGTCATTGCATCTGGGAGAAATCGAACAACGGAGACAAGAAATGCTACAAGACACGCAGAGATGGAAGC
AATTGATGTTCTTCTTGAACAGTGGCAAAAAATTGGACTTTCAGTGTCAGAAGTTGCTGAAAAAATTTCAACATGCAGTCTCTATGTTACATGTGAACCA
TGTATAATGTGTGCTGCAGCTTTGTCGATACTTGGTATAAAAGAAGTATATTATGGATGCGCAAATGATAAATTTGGAGGTTGTGGATCAATATTGTCAT
TGCATTGTAGCAGCTCTAAACTACCTAACAGTGGGGACATTGCACAAAGGAAAGATTTCAAATGTACTGGAGGAATAATGGCACTTGAAGCAGTCTCTCT
TCTACGACGTTTCTATGAACAAGGGAACCCCAATGCTCCAAAACCTCACAGGCCACTGGTTCAACAGGCAACAAACAACTAG
AA sequence
>Potri.006G075300.4 pacid=42769085 polypeptide=Potri.006G075300.4.p locus=Potri.006G075300 ID=Potri.006G075300.4.v4.1 annot-version=v4.1
MDSHVEEGCSSETLAFMELAIEQAEDALNSLEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEMEAIDVLLEQWQKIGLSVSEVAEKISTCSLYVTCEP
CIMCAAALSILGIKEVYYGCANDKFGGCGSILSLHCSSSKLPNSGDIAQRKDFKCTGGIMALEAVSLLRRFYEQGNPNAPKPHRPLVQQATNN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48175 TAD1, EMB2191 tRNA adenosine deaminase 1, em... Potri.006G075300
[exp]
0 1
AT3G60300 RWD domain-containing protein ... Potri.002G138000
[exp]
1.41 0.7067
AT5G57150 bHLH bHLH035 basic helix-loop-helix (bHLH) ... Potri.018G141800
[exp]
14.07 0.6144
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Potri.013G028700
[exp]
19.89 0.6606
AT3G08505 C3HZnF zinc finger (CCCH-type/C3HC4-t... Potri.001G268200
[exp]
22.58 0.6613
Potri.017G112500
[exp]
32.15 0.6230
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Potri.006G039400
[exp]
39.72 0.6713
AT4G27290 S-locus lectin protein kinase ... Potri.011G125200
[exp]
81.38 0.6138
AT2G18465 Chaperone DnaJ-domain superfam... Potri.001G308900
[exp]
84.25 0.5829
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
163.09 0.5947
AT2G27310 F-box family protein (.1) Potri.005G208200
[exp]
173.66 0.5768

Potri.006G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.