Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19260 203 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G09790 49 / 7e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT5G24330 48 / 2e-05 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT1G77250 47 / 5e-05 RING/FYVE/PHD-type zinc finger family protein (.1) AT4G14700 47 / 6e-05 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT3G01460 46 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT4G12620 45 / 0.0003 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT5G44800 44 / 0.0008 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142300 [exp] 813 / 0 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G277400 [exp] 219 / 2e-62 AT2G19260 169 / 4e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G142201 [exp] 185 / 2e-53 ND / Potri.012G018300 [exp] 50 / 7e-06 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G183700 [exp] 49 / 2e-05 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.015G009632 [exp] 48 / 2e-05 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.002G076900 [exp] 48 / 4e-05 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.009G054300 [exp] 47 / 5e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Potri.017G072460 [exp] 47 / 7e-05 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015537 [exp] 169 / 2e-45 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020162 [exp] 168 / 1e-44 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020012 [exp] 167 / 3e-42 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10029733 [exp] 52 / 2e-06 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10042764 [exp] 51 / 5e-06 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10031848 [exp] 49 / 2e-05 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031846 [exp] 49 / 2e-05 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10031279 [exp] 47 / 6e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10036223 [exp] 45 / 0.0003 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10030625 [exp] 45 / 0.0004 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.006G075400.6 pacid=42767881 polypeptide=Potri.006G075400.6.p locus=Potri.006G075400 ID=Potri.006G075400.6.v4.1 annot-version=v4.1 ATGTTGATACAGAGTTCCCTATCTACTTCAATTGAATGTACTCCATTTCATGTATCTGACCAAGGGAAACAGGATTTATTTTGTGACTGGATGCCTGGTA CTGAAATTTGGCAGATGTGCTCAAAATGTCATGAACACTGCCATAATTGCTGTAAAGATGCTGCTTCAATCACCGAGGAAAAGGAGACTAACAATTATTC ATGCCTGTTAAGTTTTCCGAGAGGTCCTCATCCACCAACTATCATTAAAATGTCTGAAAGTTCAGCACCTAGTTTTGTATATTGTAGAAGGAAGTTACAA GGAAACTCTATTGAGTTTTTATCAGCAATCACAAAGAGAAGTGGAGAGGATTGTCCTTATGCCATCAATTCTGATGGTCCTTCAGTTGCAGTTAAGGAGC ACTGTGTAGTTTCTGAAGATGAGCATGAAACCGGTACTGTTAGAGTACCTCTCATGACTCCTATATTATGCAATGGAGTTGATTGTTCATGCCCCTTTTC CTTTGGAAGAAGTACTCAACTTGCATCTGTCAGTTCAGTGTCTGAAAGTGCTGCTACTAATTTTGTTTATGGGAAAACAAAGCTACGACAAAACTCTGTT TCCTTTTTATCAGCAATGGCAAAGACAAGTGGAGAGGATTGTCTTTCTGTGATCAGTTCTGATGGTCCATCAGCTGCACGGAAGGAGCAGCGCCTAATTT CTATACATGTGCATGGAGCTGCCCTTGTACCTCGTCCTCCAGTATGCAATAGAGCTGATTCTCCATGCCCATTAAGTTCACAAAGAAGCCCTCAGCTACC CACTGTCAGTACAATGTCTGAAAGTTCTGCATGTAATTTTGTATACAGCAGAAAGAAGCTGCGAGGAAACTCTGCTAGCTTTTTATCAGAACAGATCCCT GCAATGGCAAAGAGAAGTGGAGGAGAGGATTGTCTTTCTTTAATCAGTTCTGATTGTCCATCAGCTGCACGCAAGGAGCAATGCCTAATTTCTCAACATG AGCAAGGAGCTGCCCTTATGCCTCCTCCTACAGTATACAACAAAGATGATTCTCCATGCCAATTATGTTTACAAAGAAGTCAGCTACCAACTGCCAGTAC AATGTCTGAGATTTCTGCATGTAATTTTATATACAGCAGAAGGAGGATGCGAGGAAAATCTGTTACCTTTTTGTCAGCAGAGGTCCCTGGAATCACGAAG AGAAGCAGAGAAGATTGCCTTTCAGTCATCAGTTCCGATGGTCCTTCACTTGCAGTTGAGGAGGCACATGTAGTTTCTCAAGATGATCGAGATCAGCATG AAAGGGGAACTGGTGGAGCTCTTATGCCTCCTCCTATAGCATACAACAGTGATGATTCTCAATGCCGATTAAGTTTACAAGGAAGTCCTCAGCTACCAAC TTCCAGTACAATGTCTGAAATTTCTGCACGTAATTTTGTATACAGCAGAAGGAAGCTGCGAGGAAACTCTGCTACCTTTTTGTCAGCACAGGTCCCTGGA ATCACAAAGAGAAGCAGAGAAGATTGCCTTTCAATCATCAGTTCTGATGGTCCTTCACTTGTCGTTGAGGAGGCACGTGTAGTTTCTCAAGATCATCAAG ATCAGTTTGAAAGGGGAACTGGTGGGGCACTTCCCAGGCCTCCTTTAGTATGTTATGGAGAGCCCCATGTTTCAAAATCAGAATCTAGCAGTGGATGTTC ACTTGTTGAAGACCTGGTTTCTGATGAGGCTACAAAAAAAAGCAGGCCAAAAATCATTGAGGTTGACAGTATAAATGATAGCTGCTCATCATCAAAGTCA AATATGGATCTTGTTTCAGATTCTACAAAGACTGAAGGAGATGATAATGGTGAGTGCTCTTCATCCAGTATAGTGGCAGCAGAGGTCACAGGGGAAGATC AGTCTGAAAATGATCAGTGTATCTCTATACTCAGAAGGCAGGGGGCTTTTGAGGGAGTTTGGCCCGGCAAAACCCATGTTTCTGCTAAAAGCATTGGTGA TGGTAGTGGTAGTGGTAGCAGCAGTTCTCGGCCATGCAAAAAATGTTTTCGCAAGGGATCCCCTGTAAAGATGCTAATTTGTGATAATTGTGAAGATTCA TTTCATGTATCTTGCTGCAATCCTCGTGTAAAAAGAATACCAGTTGATGAATGGTTGTGTCGTTCTTGTTGGAAGAAGAAACGGATAATTCCCAAGGAGA CAATTTCCAGAAAATCTCTCAATATAATTGGTGACATGGGCAGATGTAGAGATGCTTCATCTACTGGTGAATCAAATCCTATAGCATTGATGTTGAGAGA TACTGAGCCGTATACAGGTGGTGTTCGAGTTGGAAAAGGTTTTCAAGTAGACATTCCAGATTGGTCAGGTCCAATTATCAATGTCGTCGACATTATTGGC AAACCTTTGGTATTGGAGCCATCATACTTTGTCGGTTTGTTCGAATTGAAGTCCAACAAGTCTTCTAAACTTGGATCTATAGGCAATTGGCTTCAGTGTA AACAGGTTATAGATGATGCAGCAGAAGGAGGCAATGTAACTATATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTGCTGTCTGGGAATG CTTCTGCTGTGTCTTCTGGGATCCAATTCATGCCGACTGTGCTGCACCTCAGGAGCTGGAAACAGATGAAGTTATGAAGCAAATAAAGTATATTCAGATG CTGAGACCCCGAATAGCAGCTAAACATCAGAAATTGAGGCGTGCCAGCATTGGCGATCCAATGGATGATTGA
AA sequence Show only first row Show all	>Potri.006G075400.6 pacid=42767881 polypeptide=Potri.006G075400.6.p locus=Potri.006G075400 ID=Potri.006G075400.6.v4.1 annot-version=v4.1 MLIQSSLSTSIECTPFHVSDQGKQDLFCDWMPGTEIWQMCSKCHEHCHNCCKDAASITEEKETNNYSCLLSFPRGPHPPTIIKMSESSAPSFVYCRRKLQ GNSIEFLSAITKRSGEDCPYAINSDGPSVAVKEHCVVSEDEHETGTVRVPLMTPILCNGVDCSCPFSFGRSTQLASVSSVSESAATNFVYGKTKLRQNSV SFLSAMAKTSGEDCLSVISSDGPSAARKEQRLISIHVHGAALVPRPPVCNRADSPCPLSSQRSPQLPTVSTMSESSACNFVYSRKKLRGNSASFLSEQIP AMAKRSGGEDCLSLISSDCPSAARKEQCLISQHEQGAALMPPPTVYNKDDSPCQLCLQRSQLPTASTMSEISACNFIYSRRRMRGKSVTFLSAEVPGITK RSREDCLSVISSDGPSLAVEEAHVVSQDDRDQHERGTGGALMPPPIAYNSDDSQCRLSLQGSPQLPTSSTMSEISARNFVYSRRKLRGNSATFLSAQVPG ITKRSREDCLSIISSDGPSLVVEEARVVSQDHQDQFERGTGGALPRPPLVCYGEPHVSKSESSSGCSLVEDLVSDEATKKSRPKIIEVDSINDSCSSSKS NMDLVSDSTKTEGDDNGECSSSSIVAAEVTGEDQSENDQCISILRRQGAFEGVWPGKTHVSAKSIGDGSGSGSSSSRPCKKCFRKGSPVKMLICDNCEDS FHVSCCNPRVKRIPVDEWLCRSCWKKKRIIPKETISRKSLNIIGDMGRCRDASSTGESNPIALMLRDTEPYTGGVRVGKGFQVDIPDWSGPIINVVDIIG KPLVLEPSYFVGLFELKSNKSSKLGSIGNWLQCKQVIDDAAEGGNVTICGKWRRAPLFEVQTAVWECFCCVFWDPIHADCAAPQELETDEVMKQIKYIQM LRPRIAAKHQKLRRASIGDPMDD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G075400 [exp]	0	1
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	1.73	0.9070
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.008G178951 [exp]	2.00	0.8906
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	3.46	0.9061
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.007G110400 [exp]	3.87	0.9015
AT1G11390			Protein kinase superfamily pro...		Potri.011G041500 [exp]	5.65	0.8654
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	6.32	0.8758
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	7.41	0.8875
AT4G11450			Protein of unknown function (D...		Potri.001G104200 [exp]	7.74	0.8584
AT4G01960			unknown protein		Potri.014G118000 [exp]	11.74	0.8244
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	12.48	0.8865

Compare expression of checked genes

Potri.006G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.