Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29940 466 / 5e-154 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT3G19510 207 / 3e-57 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT3G14740 44 / 0.0003 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G12620 43 / 0.0007 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT1G77250 43 / 0.0009 RING/FYVE/PHD-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142400 [exp] 1003 / 0 AT4G29940 461 / 4e-152 pathogenesis related homeodomain protein A (.1.2) Potri.001G298400 [exp] 195 / 3e-52 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G093000 [exp] 187 / 1e-49 AT3G19510 291 / 3e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G083700 [exp] 42 / 0.0005 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.017G072460 [exp] 43 / 0.001 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020011 [exp] 552 / 0 AT4G29940 429 / 7e-141 pathogenesis related homeodomain protein A (.1.2) Lus10015536 [exp] 550 / 0 AT4G29940 440 / 4e-144 pathogenesis related homeodomain protein A (.1.2) Lus10018741 [exp] 196 / 4e-53 AT3G19510 304 / 4e-92 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024826 [exp] 146 / 4e-36 AT3G19510 224 / 1e-62 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10029733 [exp] 44 / 0.0005 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.006G075500.1 pacid=42767179 polypeptide=Potri.006G075500.1.p locus=Potri.006G075500 ID=Potri.006G075500.1.v4.1 annot-version=v4.1 ATGGGTGATTCTGGAAAGACGTCAAAGCTGCAAGACTCGCACAAATGTTCACCTTCTGACACAGTGACTGGGTCGTTGCTGATTAAATCATTGAAGATAA AGAAGGACAGCAAAATATCTCCTAGAAAAGGCCAAAAAACGAAAACAAAATCAAAACCAAAACCAATACCTCATCTAAAAACTATCATCAGTTCAGCTGT ATCAAAAAGAAAAGTTTCTCCTAAGGGCATTGGGAATGGCTCTACCAGTAGAAAACTGATTCATAGGAAAATTCTGCATAAAGCACTTGATAAGAAGGCC TCAAGGAAGGGGGCTTCCTCAGGGCTACAATTGTCAACTATTGATTCTAAGGGAAATGGAAAAAATGGTGATGAAGGTGCAATTAAAAAACTCAAGAAGA GGAAGCCTAAGAAAAGGCAAAGGGACAAGGTAAAGCTAGATGAACCATCACGATTGCAGAGGAGAGCAAGGTACCTGATGATTAAAATGAAGCTGGACCA GAACCTTATAGATGCTTACTCTGGAGAAGGCTGGAAAGGTCAAAGTCGAGAGAAGATCAGGCCAGAAAAGGAACTACTGCGAGCAAGGAAGCAGATTTTG AAGTGTAAACTTGGTTTACGTGATATAATTCGGCAGGTGGATTCTCTTAGTACAGTAGGATGTATTGAAGAGACAGTTATGGCTCCAGATGGATCTGTTT CACATGAACATATATTCTGTGCGAAGTGCAAATTGAATGAAGTTTCCCCAGATAATGATATTGTACTCTGTGATGGTACATGCAACTGTGCTTTCCACCA AAAATGCCTTGAACCTCCCTTGGATACTGAAAGTATACCTCCAGGAGATCAGGGATGGTTTTGCAAGTTCTGTGAATGCAGGATGGATATTATAGAAGCT ATGAATGCTCATTTGGGAACCCATTTCTCAGAGGACAGCAGTTGGCAGGATATTTTCACAGAAGAAGCAGCAATTCCTGATGCTGGAAATGTGCTATTAA ACCCCGAAGAAGAATGGCCTTCAGATGATTCTGAAGATGATAATTACGATCCAGAGAGGAGAGACAACATCATGAGTGAAGCGGGTACTGATGATGATGC ATCTGATGACATCAGCAGTTCAACCAGCTTGGGTTGGTCTTCAGATGGTGAGGTTTTTTTGGGATCCAGGAGGTGGGAGATGCATGGCTTGGACTTCAGA AACAATTCTATTTATAGCAGTTTAGATTCTGATGAAACCAGTGATGGGGAAATTGTTTGTGGCCGTAGGCAGAGAAGAGCAATTGACTATAAGAAGTTAT ATGATGAGGTGTTTGGAAAGGATGCTCCTGCACACGAGCAAGCCAGTGAAGACGAAGATTGGGGTCCTGGCAAAAGAAAGCGACGGGAGAAGGAGTCAAA TGCAGCCAGCACCCTTATGACACTGTGTGAAAGTAAAAAAAAAAGTAAAAGTGATGAGACCATTGAAGGTATGATGAACCTTCCCCCTCAAACTCGAAGG CCAATTTTCAGACTCCCCCCTGATGCAGTTGAGAAACTTCGCCAAGTATTTGTAGAAAATGAACTTCCATCTAGAACTGTCAAGGAGAATCTGTCAAAAG AATTGGGCCTTGAACCTGGGAAGGTTAGCAAATGGTTCAAGAATTCCCGTTATTTAGCTCTGAAGTCCCGGAAGGTAGAGAAAGGAGAACAACTTCATAA CTCTAGTTCCAAAGTCTCTGCTGAACCCACATTAAATGTCATGGAGGGCAAAACTGCTGATCTTTCACAGGATTCTTGGGAAGAAACTGAGGTATGTATC CCAAAGAATTTGAAAAGGATCCTTCAGAGGAAGAAGCTGAAGTCAATAAGCAGAAGTTTAAGGAAAAATGAACAGAAAAGAGGTTCCTACGAATCACCTA CTAAAAGCAATGAGATGAATGCTGAGTGCAGTGATGATGTGAGCTTGAAGAAGTTGTTAAAAGCAAAACCAAAGGGAGTAAAGAAAAAGGTTAATCCTAT TTCAGTAGCGGCTGAATATGATATGGAGAGACTCTGTAGAGCGAAGGCTATATTAGAGAAGATGAAGCAGAAAGTGGTGAAGCTACAAAATGGCAAAGCT AGGAAGTCATCCAAAACCCGTCCACTTGAAGAATTTATCGTTTACATTCCCATTGCTGAGTTGAGGGGAAAAAATTGA
AA sequence Show only first row Show all	>Potri.006G075500.1 pacid=42767179 polypeptide=Potri.006G075500.1.p locus=Potri.006G075500 ID=Potri.006G075500.1.v4.1 annot-version=v4.1 MGDSGKTSKLQDSHKCSPSDTVTGSLLIKSLKIKKDSKISPRKGQKTKTKSKPKPIPHLKTIISSAVSKRKVSPKGIGNGSTSRKLIHRKILHKALDKKA SRKGASSGLQLSTIDSKGNGKNGDEGAIKKLKKRKPKKRQRDKVKLDEPSRLQRRARYLMIKMKLDQNLIDAYSGEGWKGQSREKIRPEKELLRARKQIL KCKLGLRDIIRQVDSLSTVGCIEETVMAPDGSVSHEHIFCAKCKLNEVSPDNDIVLCDGTCNCAFHQKCLEPPLDTESIPPGDQGWFCKFCECRMDIIEA MNAHLGTHFSEDSSWQDIFTEEAAIPDAGNVLLNPEEEWPSDDSEDDNYDPERRDNIMSEAGTDDDASDDISSSTSLGWSSDGEVFLGSRRWEMHGLDFR NNSIYSSLDSDETSDGEIVCGRRQRRAIDYKKLYDEVFGKDAPAHEQASEDEDWGPGKRKRREKESNAASTLMTLCESKKKSKSDETIEGMMNLPPQTRR PIFRLPPDAVEKLRQVFVENELPSRTVKENLSKELGLEPGKVSKWFKNSRYLALKSRKVEKGEQLHNSSSKVSAEPTLNVMEGKTADLSQDSWEETEVCI PKNLKRILQRKKLKSISRSLRKNEQKRGSYESPTKSNEMNAECSDDVSLKKLLKAKPKGVKKKVNPISVAAEYDMERLCRAKAILEKMKQKVVKLQNGKA RKSSKTRPLEEFIVYIPIAELRGKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	0	1
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	2.82	0.8893
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	4.47	0.8675
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.003G171200 [exp]	4.58	0.8648
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	6.00	0.8865
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	9.16	0.8664
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	9.38	0.8627
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	9.48	0.8755
AT1G33050			unknown protein		Potri.001G452300 [exp]	12.00	0.8306
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.007G093400 [exp]	13.96	0.8296
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	14.69	0.8705

Compare expression of checked genes

Potri.006G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.