Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01600 545 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 540 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 531 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 513 / 5e-177 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 412 / 5e-138 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 217 / 1e-62 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 178 / 1e-48 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 172 / 3e-46 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 148 / 9e-38 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 144 / 1e-36 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142800 [exp] 810 / 0 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 561 / 0 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 554 / 0 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 362 / 1e-118 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 358 / 3e-117 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 358 / 3e-117 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 243 / 8e-77 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 194 / 2e-54 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 192 / 1e-53 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025462 [exp] 664 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 551 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 545 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 541 / 0 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 538 / 0 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 360 / 8e-118 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 357 / 3e-116 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 346 / 4e-111 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 296 / 2e-93 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 182 / 3e-49 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.006G075800.2 pacid=42769541 polypeptide=Potri.006G075800.2.p locus=Potri.006G075800 ID=Potri.006G075800.2.v4.1 annot-version=v4.1 ATGGCAACGTTCACAAGTTTTAGAAAAGCTTATGGGGCTCTCAAGGATACAACAAAAGTTGGCCTTGCAAAGGTCAATAGTGAATACAAGGAATTGGATA TTGCCATTGTAAAGGCTACCAATCATGTTGAATGCCCTCCTAAGGAACGTCATGCTAGAAAAATATTTTCCGCAACATCAGTAATAAGACCTCGAGCAGA TGTGGCATACTGCATTCATGCACTTTGTAAGAGATTAGCCAAGACGCAGGATTGGATTGTTGCGATAAAGACGTTGATAGTCATTCATAGGACATTGAGA GAGGGAGACCCTACATTTCGAGAGGAGCTCTTGAACTACTCACATAGAGGAAATATTCTCCAAATGTCCAATTTCAAAGATGACTCTAGTTCGCTGGCCT GGGATTGCTCTGCATGGGTTCGTACTTATGCTCTTTTTCTAGAGGAAAGATTGGAGTGTTTTAAGGTTTTGAAATATGACATTGAAGCTGAGCGCTTGAA TAAAGCATCACCTGTGGCAATCAAGGTGCATAGTAAAACACGGCTCTTGAATGGAGAAGATCTGTTGGAGCAGCTACCTGCATTGCAGCAGCTTCTTTAT CGTCTACTTGGTTGCCAGCCTGAAGGTGGAGCTTATAACAATTATCTAATACAGTATGCCTTGGCTCTGGTCTTGAAGGAGAGCTTTAAAATCTACTGTG CAATCAATGATGGAATTATCAATCTTGTTGACCTGTTTTTTGAAATGACAAAACACGATGCTGTCAAAGCTCTTAATATATACAGAAGAGCTGGCCAACA GGCTGAAAATCTTGCTGAATTTTATGAACATTGCAAAGGCTTGGAGCTTGCAAGGAACTTTCAGTTTCCAACACTGAGACAGCCCCCTCCAACTTTTCTT GCAACAATGGAAGAGTATGTTAAAGAAGCGCCTCAGTCAGGTTCTGTCCCCAAGAGACTGGAGTATACAGAGAATGAGCCCGAGGAACCTGAGGAACCTT CAGAACCTGTAGAAGTTGAAAAGGTTGATGATGAAAAAACACTGATAGATGTGGAGGAAGAAACTAAACCTGAGGAAGAGGTGGTAGAACCTCCATTAGT ATCAAACGATGCTATTGGGGATTTGCTGGGTCTGAATGAAATAAATCCAAAAGCTGCAGAGCTTGAGGAAAGCAATGCAATGGCTCTTGCAATTGTTCCA CCTGGTGCTGATCCTCTGTCTTCATCAAAGGCTTTAAGTGAACTTGGTAAGCCAAATGCAACAGGTTGGGAGCTAGCACTTGTTACCACTCCAAGCAACC CAACTAGCCAACCAATGCAAAGCAAAATGGGTGGTGGTTTTGACCGGCTATTGCTTGATAGCCTATATGAAGATGATACTGCAAGGAAGCAAATACAAAT GCAAAATGCAGGGTACGGATATGGTGCCACAGCTGTGCACAATCCATTTGAACAACAGGACCCATTTGCAACATCCAACAGCATAGCACCCCCAACAAAT GTGCAGATGACGATGATGGCTCAACAACAGCAGCAGTACCAACAGCAGCAAATGATGATGCAACAGCACCAACAACAAAACCAGTCGATGATAGGTCCTT GTCAATACCAACCACAATATCCTCAACAGCAAATGCAGCAGGTGGGACAGATGGGTCCTGCCAACCCATTTGCAGATCCATTTTCGAGTTTCCCACAAAG TTCTGAACCACAGCAAGGAAACCACATGCTAATTTAG
AA sequence Show only first row Show all	>Potri.006G075800.2 pacid=42769541 polypeptide=Potri.006G075800.2.p locus=Potri.006G075800 ID=Potri.006G075800.2.v4.1 annot-version=v4.1 MATFTSFRKAYGALKDTTKVGLAKVNSEYKELDIAIVKATNHVECPPKERHARKIFSATSVIRPRADVAYCIHALCKRLAKTQDWIVAIKTLIVIHRTLR EGDPTFREELLNYSHRGNILQMSNFKDDSSSLAWDCSAWVRTYALFLEERLECFKVLKYDIEAERLNKASPVAIKVHSKTRLLNGEDLLEQLPALQQLLY RLLGCQPEGGAYNNYLIQYALALVLKESFKIYCAINDGIINLVDLFFEMTKHDAVKALNIYRRAGQQAENLAEFYEHCKGLELARNFQFPTLRQPPPTFL ATMEEYVKEAPQSGSVPKRLEYTENEPEEPEEPSEPVEVEKVDDEKTLIDVEEETKPEEEVVEPPLVSNDAIGDLLGLNEINPKAAELEESNAMALAIVP PGADPLSSSKALSELGKPNATGWELALVTTPSNPTSQPMQSKMGGGFDRLLLDSLYEDDTARKQIQMQNAGYGYGATAVHNPFEQQDPFATSNSIAPPTN VQMTMMAQQQQQYQQQQMMMQQHQQQNQSMIGPCQYQPQYPQQQMQQVGQMGPANPFADPFSSFPQSSEPQQGNHMLI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.006G075800 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.008G167800 [exp]	3.31	0.8923
AT5G08390			Transducin/WD40 repeat-like su...		Potri.010G255400 [exp]	3.46	0.8825
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	10.95	0.8705
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	12.80	0.8898
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	15.87	0.8681
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.001G455300 [exp]	18.70	0.8411
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	19.18	0.8626
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.018G055001 [exp]	20.44	0.8488
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.015G113200 [exp]	21.65	0.8669
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	22.71	0.8759

Compare expression of checked genes

Potri.006G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.