Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29950 811 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G19240 706 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G57210 628 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G19230 62 / 1e-09 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G13730 61 / 1e-09 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT2G43490 56 / 8e-08 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT1G04830 54 / 3e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G59570 52 / 2e-06 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 49 / 1e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 48 / 2e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143100 [exp] 1365 / 0 AT4G29950 791 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G069300 [exp] 64 / 2e-10 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 64 / 2e-10 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 63 / 4e-10 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 63 / 4e-10 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G132900 [exp] 56 / 2e-07 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.017G023200 [exp] 55 / 2e-07 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.001G419100 [exp] 50 / 3e-06 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 49 / 1e-05 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001628 [exp] 826 / 0 AT4G29950 739 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10001435 [exp] 751 / 0 AT4G29950 661 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 57 / 3e-08 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10027046 [exp] 57 / 5e-08 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10004802 [exp] 56 / 8e-08 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10017104 [exp] 56 / 1e-07 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10043064 [exp] 50 / 7e-06 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10011159 [exp] 50 / 7e-06 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 49 / 1e-05 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022905 [exp] 48 / 2e-05 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.006G076000.1 pacid=42769043 polypeptide=Potri.006G076000.1.p locus=Potri.006G076000 ID=Potri.006G076000.1.v4.1 annot-version=v4.1 ATGAGGTCAGCTTCAATTGAGCAGGAAATGCCAGCCGGAGAGGGAAATCGGAGTCGTTTTGAGAATTTAAGAGGGGTTCAATGGAGGATAGATCTTGGGA TTTTGCCTTGTCCTTCTTCTTCTAGTGTTGATGATCTTCGTAGAGTTACTGCTAATTCTAGAAGAAGGTATGCCGGTTTGAGAAGGAGGCTCTTAGTTGA TCCACATATGTCAAAGGAAGGAAGTAGTTCACCTGATCCTGTAATAGACAATCCACTGTCACAAAATCCAGATAGCACCTGGGGTCGCTTCTTTCGGAAT GCTGAACTGGAAAAAACACTTGACCAGGATCTATCACGATTGTATCCAGAACATGGTAGCTATTTCCAGACTCCTGGCTGCCAAGGAATGTTAAGGCGAA TCTTGTTGTTGTGGTGCCTTAGGCATCCAGAGTATGGTTATAGACAAGGAATGCACGAAGTTCTGGCTCCTTTTCTATATGTTCTTCACATTGATGTGGA GTGTCTCTCTGAAGTGCGCAAGCAGTATGAAGACCATTTCACAGACAAATTTGATGGTTTAGCGTTTCAGGAAAATGATCTTACATACAATTTTGATTTT AAAATTTTTTTAGATTCCATGGAGGATGAAATTGGCTCCCATGGTAATACCATCAAAGTCAAGTCTCTCAATGAGCTTGATCCTGAGATACAAATGACTG TATTACTAACTGATGCTTACGGAGCTGAAGGTGAATTGGGTATTGTCATGTCAGAGAAATTCATGGAGCATGATGCTTACTGTATGTTTGATGCATTGAT GAGTGGGTCTCATGGTTCAGTTGCCATTGTGGACTTCTACTCTCACTCCCCTGCATGTGGGTCCCATTCTGGCTTACCCCCTGTCATTGAAGCTTCTGCT GCATTGTACCATTTGCTTTCTGTTGTTGATTCGTCTTTACACGAGCACCTTGTTGAGCTGGGCGTTGAACCTCAGTATTTCGCACTTCGCTGGTTACGGG TTTTATTTGGTCGAGAATTTTCACTTGAAAACCTCTTGTTAATATGGGATTCAATATTTGCGGCAGATAATAATATCATCTTAGACAAAGTTGCTGAAGA TGATGCAGACTTTGGCTTTCGTATCTTTAGATCACCTCGGGGAGCATTGATCCCAGCTATGGCTGTTTCCATGATTCTTCATCTGCGATCTTCCCTCCTT TCCACTGAGCATGCAACTACTTGTCTCCAGAGACTGTTGAATTTTCCTGAGAATATAGATCTGAGAAAACTGATAAATAAGGCGAAGTCTTTACAGACAC TTGCACTGGATACTAATATGTCCTCTGTGTCTCCTCCATTTGATGGGATTTATAACCACAGTAGATCAATGGTCACGAGAGGTCATACTCATACACTTTC ATCTGATTCTGTTTCCCCAAAAACTCCTCTAAATGCAGTGCCTGACAGCTATTGGGAGGAGAAATGGAGAGTAATGCACAAGGCAGAAGAACTCAAGCAT GATAGTTTAGGGAAACTAAATCCAACCCAGAAAAAACGGTGGACAGAAAAAGTAAGATTGCCCCTATGTAGGACAGAATCTGCTCCAACTCCTGTAAGCG TAGGGAGTGGGAAGAAGGATCAGAAGTCATCTGTTAGGCGTAGTTTGTTAGAAGATTTATCGCGTGAACTTGGGCTGGATGAAGATACTGGAAAACCAGA TTGCCATGAAGTTTCGGGTGAGAAGGACCATCGTACTGCAGAAGTTGAGGAAGGGGGACCAGTCAATGTTAACAATGACTTCGCATGCTCAACTGTGGAG AGATGTCTTAGTGGAATTGCTGGCAGTGAGGAAACTTCATCCGTGTTCTCAGACCCGTCTAGTTCTCTTAGTGGTGTTAATGACCATGAAAATGAGTCAG AGAAAAGTAGTGTTGCCTCAAATATGTCTGTTGATGAAAATGATGATCAGCCTGAGGCTCTCCAGGAAGATTCAACACGACCTGTTTCCCACCCCCCTGA AGCTGCGTCTTTAAATTCTGGGACCAACAATGAGCCTACTGGAAAACAGGTTGCAGGTCCTAAGGAGAGGAAGCTTCTTTCAGGTAAATTTCAATGGATT TGGAAGTTCGGACGGAATACTGCCGGTGAGGAGACATCTGAAAAGGGAAGCGACACACTTGAGACTACAAAACCTGGCAATGATGCGAGTAATCAGATTA ATTCCATAGGATCTTCATCTGTCAATGGTTCTTGCAATTCTTATGCCAGTAGCGAAGGAGAAAGCGTGGACCAGAATGTGATGGGTACATTGAGGAACCT TGGGCAGTCCATGCTTGAACATATTCAGGTGATTGAGTCAGTTTTCCAGCAAGATAGGGGTCAGGTAGGTTCATTGGAGAATTTCTCCAAAAGTGTTATA GTCGGCAAAGGACAAGTTACAGCCTTGACAGCACTTAAAGAGCTTCGGAAAATCAGCAATCTCTTAACTGAGATGTGA
AA sequence Show only first row Show all	>Potri.006G076000.1 pacid=42769043 polypeptide=Potri.006G076000.1.p locus=Potri.006G076000 ID=Potri.006G076000.1.v4.1 annot-version=v4.1 MRSASIEQEMPAGEGNRSRFENLRGVQWRIDLGILPCPSSSSVDDLRRVTANSRRRYAGLRRRLLVDPHMSKEGSSSPDPVIDNPLSQNPDSTWGRFFRN AELEKTLDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEYGYRQGMHEVLAPFLYVLHIDVECLSEVRKQYEDHFTDKFDGLAFQENDLTYNFDF KIFLDSMEDEIGSHGNTIKVKSLNELDPEIQMTVLLTDAYGAEGELGIVMSEKFMEHDAYCMFDALMSGSHGSVAIVDFYSHSPACGSHSGLPPVIEASA ALYHLLSVVDSSLHEHLVELGVEPQYFALRWLRVLFGREFSLENLLLIWDSIFAADNNIILDKVAEDDADFGFRIFRSPRGALIPAMAVSMILHLRSSLL STEHATTCLQRLLNFPENIDLRKLINKAKSLQTLALDTNMSSVSPPFDGIYNHSRSMVTRGHTHTLSSDSVSPKTPLNAVPDSYWEEKWRVMHKAEELKH DSLGKLNPTQKKRWTEKVRLPLCRTESAPTPVSVGSGKKDQKSSVRRSLLEDLSRELGLDEDTGKPDCHEVSGEKDHRTAEVEEGGPVNVNNDFACSTVE RCLSGIAGSEETSSVFSDPSSSLSGVNDHENESEKSSVASNMSVDENDDQPEALQEDSTRPVSHPPEAASLNSGTNNEPTGKQVAGPKERKLLSGKFQWI WKFGRNTAGEETSEKGSDTLETTKPGNDASNQINSIGSSSVNGSCNSYASSEGESVDQNVMGTLRNLGQSMLEHIQVIESVFQQDRGQVGSLENFSKSVI VGKGQVTALTALKELRKISNLLTEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G076000 [exp]	0	1
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	6.63	0.7424
AT1G73640		AtRABA6a	RAB GTPase homolog A6A (.1)		Potri.015G039700 [exp]	8.48	0.7208
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.005G219600 [exp]	18.33	0.7063
AT1G55270			Galactose oxidase/kelch repeat...		Potri.003G217700 [exp]	19.28	0.6253
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	21.02	0.6477
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	26.49	0.6895
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.001G390200 [exp]	30.00	0.6068
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	30.78	0.6909
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Potri.003G087800 [exp]	31.62	0.6861	Pt-TOM2.1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.001G248700 [exp]	32.86	0.6401

Compare expression of checked genes

Potri.006G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.