Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33170 382 / 1e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 370 / 9e-119 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 366 / 3e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 363 / 1e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 353 / 6e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 350 / 3e-110 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 345 / 3e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 344 / 6e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 347 / 1e-109 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 343 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021700 [exp] 397 / 7e-130 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 405 / 9e-130 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 391 / 1e-125 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 382 / 2e-123 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G084900 [exp] 375 / 2e-121 AT5G39680 782 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 372 / 2e-118 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 373 / 3e-117 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 360 / 5e-116 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 362 / 1e-115 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024376 [exp] 697 / 0 AT3G15130 370 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019098 [exp] 381 / 3e-121 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 377 / 5e-121 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 365 / 2e-117 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 366 / 4e-117 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 365 / 1e-116 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 367 / 3e-115 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 355 / 8e-113 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004253 [exp] 354 / 1e-111 AT3G49170 832 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001483 [exp] 347 / 3e-111 AT5G39680 691 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G076100.6 pacid=42770437 polypeptide=Potri.006G076100.6.p locus=Potri.006G076100 ID=Potri.006G076100.6.v4.1 annot-version=v4.1 ATGATGGTCCCAGAACTCGTTGGATCCTTAATACACCAATGTTCAAAAACCAAGGCTCTAAGACAAGGTCTCCCGCTTCACGCAATAGCTATAAAAACAG CAACAAGGTCTGATGTTATTGTCTCTAATCACATCCTCAACTTGTATGCAAAATGTCGCAAACTAAGGGAAGCACGCCAGGTGTTCGATGAAATGTCTGA AAGGAATCTTGTTTCATGGTCAGCTATGATTTCTGGTTATGAACAGATTGGAGAGCCCATTTTGGCACTTGGGTTGTTTTCAAAGTTGAATATTGTGCCT AATGAGTACGTATATGCCAGTGTTATTAGTGCTTGTGCTAGTTTAAAGGGACTAGTTCAAGGAAAGCAAATTCATGGTCAAGCATTGAAATTTGGGCTTG ATTCCGTTTCTTTTGTTTCTAATGCACTTATTACAATGTATATGAAGTGTGGTAAGTGCAGTGATGCATTGTTGGCTTATAATGAGGCATTAGAGCTTAA TCCTGTTGCTTATAATGCTTTGATTACTGGGTTTGTTGAGAATCAACAGCCTGACAAGGGTTTTGAAGTGCTTAGAATGATGTATCAAGATGGTTTTTTT CCTGATAGGTTTACTTTTGTTGGGCTGTTGGGGACTTGTAATAGTCGTGATGATTTGAAAAGAGGGGAACTTTTGCATTGTCAAACTATAAAGCTTAAAC TTAACTCTACTGCTTTTATTGGTAATTTGATAATCACAATGTACTCAAAGTTGAATTTGTTAGAAGAAGCAGAGAAAGCTTTTAGATCAATTGAAGAGAA AGATCTCATTTCATGGAATACTTTTATAAGCTCTTGTTCTCATTGTAATGATCATGAGAAAGCTTTGGAAGCTTTTAAAGAGATGTTAAATGAATGTCGC GTGAGGCCCGATGAATTTACTTTTGCTAGTGCTCTTGCCGCCTGTTCTGGTCTTGCGTCAATGTGCAATGGAAAGCAGATTCATGGTCATTTAATCAGGA CAAGGTTGTATCAAGATGTTGGTGCTGGTAACGCCCTTATAAACATGTATGCTAAATGTGGTTGCATCGCAAAGGCTTATTATATATTCAGCAAGATGGA GCATCAAAATCTTGTTTCGTGGAATACCATGATTGCTGGATTTGGAAATCATGGATTTGGAGGGAAGGCATTTGAACTTTTTGCTAAGATGAAGACAATG GGAGTAAAGCCAGATTCTGTAACTTTTGTTGGACTTCTAACAGCTTCCAATCATGCAGGGCTGGTGGATGAGGGGCTAGTCTATTTCAATTCTATGGAAG AAACTTATGGGATTTCCCCTGAAATTGAGCATTTTTCTTGTCTCATTGATTTATTGGGACGAGCTGGGAGATTAAACGAGGCAAAAGAGTACATGAAGAA ATTTCCTTTTGGGCATGATACTGTTGTTTTAGGTAGCTTGCTGTCTGCATGTCGGTTGCATGGAGATGTTGACACTGGGAAATGTTTTGCTAGACAACTT CTTAAACTTCAGCCAGTGACTACATCACCCTATGTTTTGTTATCAAACTTGTATGCTTCAGATGAAATGTGGGATGGTGTTGCAGAGGCCTGGAAGCTGT TGAAGGGCAGTGGATTGAAGAAGGAGCCTGGCCATAGTCTGATTGAAGTGAACGGGACTTTTGAAAAGTTTACTGTAGTGGATTTTTCACATTCAAGGAT TGAAGAGATTATGGACATGCTCAAAATTTTAAGGTGGGCAGCAATTGAAGTTTAG
AA sequence Show only first row Show all	>Potri.006G076100.6 pacid=42770437 polypeptide=Potri.006G076100.6.p locus=Potri.006G076100 ID=Potri.006G076100.6.v4.1 annot-version=v4.1 MMVPELVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWSAMISGYEQIGEPILALGLFSKLNIVP NEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFF PDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECR VRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTM GVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSACRLHGDVDTGKCFARQL LKLQPVTTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPGHSLIEVNGTFEKFTVVDFSHSRIEEIMDMLKILRWAAIEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33170			Tetratricopeptide repeat (TPR)...		Potri.006G076100 [exp]	0	1
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	2.23	0.8468
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.017G037200 [exp]	7.74	0.8192
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	10.95	0.7988
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	13.26	0.7820
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	14.96	0.7738
AT1G04270		RPS15	cytosolic ribosomal protein S1...		Potri.005G055534 [exp]	17.66	0.7814
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	19.13	0.7933
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	20.78	0.7608
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	21.72	0.7858
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	24.39	0.7930

Compare expression of checked genes

Potri.006G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.