Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57240 407 / 1e-141 ORP4C OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) AT4G25850 401 / 6e-139 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT4G25860 381 / 4e-131 ORP4A OSBP(oxysterol binding protein)-related protein 4A (.1) AT3G09300 88 / 9e-19 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 87 / 1e-18 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 84 / 1e-17 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT4G12460 66 / 1e-11 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT2G31030 64 / 5e-11 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT4G08180 62 / 3e-10 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 61 / 5e-10 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143600 [exp] 689 / 0 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G086400 [exp] 82 / 6e-17 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.019G015111 [exp] 64 / 1e-10 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.001G121700 [exp] 61 / 5e-10 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.002G088000 [exp] 61 / 8e-10 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.005G172900 [exp] 59 / 2e-09 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 57 / 2e-08 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.003G111600 [exp] 55 / 6e-08 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021603 [exp] 451 / 2e-158 AT5G57240 368 / 4e-126 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Lus10040586 [exp] 436 / 2e-152 AT5G57240 367 / 3e-125 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Lus10024386 [exp] 80 / 4e-16 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 78 / 1e-15 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10035967 [exp] 63 / 2e-10 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025695 [exp] 62 / 4e-10 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10028087 [exp] 60 / 2e-09 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024613 [exp] 59 / 5e-09 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10025635 [exp] 58 / 8e-09 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 58 / 1e-08 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [poplar] [flax] Oxysterol_BP Oxysterol-binding protein
Representative CDS sequence Show only first row Show all	>Potri.006G076400.2 pacid=42768190 polypeptide=Potri.006G076400.2.p locus=Potri.006G076400 ID=Potri.006G076400.2.v4.1 annot-version=v4.1 ATGGTCAGTGAAGGTAATGGTGATATGAAGGTTGTCCTGACCAAGCCTTTATCATTGGATGGAGATGCCCACGCCGATTATAAAGCTCCTAATTTTGCCC AACGCTTTTTAAGTCTGTTTAGGAATGTACGGCCAGGATCAGATCTCACCAATTTCCAGCTTACACCTCAATTCAACATTCCAAAGTCCCAGCTCCAATG TTTTGGTGAATCAGCATACAGCTTTGGCAAAAATTTGCTGCAGCAGTGCAACAATGCCGAGAGCTCACTTGAAAGATTCATCTCTGTTGTAGCATGGAGC ATATCCACCACACGTCCTCCTCATTTTGGTGTTGCCCCTTACAATCCCATTCTTGGAGAGACTCACCATGTCTCCAGGGGAAGCCTCAATGTTCTACTCG AACAGGTTTCCCATCACCCACCAGTTTCTGCCCTCCATGCAACAGATGACAAGGAAAATATTGAGTTCATTTGGTGCCAACATCCTGTTCCGAAATTCTA TGGTACTAGAGTTGAAGCTGAAGTGCTTGGCAAAAGGCAACTTAAGCTTCTGAACCATGGAGAGACTTATATGATGAATTCACCAAAGCTCATGGTTAGG TTTTTTCCACCTCGGGTTGATTGGATAGGCGATGTAAACATTTGCTGCCAGGAGAGTGGTCTTGAAGCTGAGTTATGCTACGCAACCAGTTCTCTCTTTG GACGTGGAGGACTCCATTCTGTTAAAGGCAAGATTTATCAGTCTTCATCCATGAAGACCCTTTATGAGGTCGAAGGGCACTGGAACAGTACTGTGAAAGC CAAGGACATTAATAGTGGTAAGGAGACAATTATATATGACGCAAAGGAAGTGTTTTCCGAGCTCAAGATTGCTGTCGTCGAGGATTTGCAGGGAATTCGG CCAACTGAATCAGCTGCAGTATGGAACGAGGTGAGCAAAGCCATACTAAGCAAAAACTGGACCAAGGCAAGAGAAGAAAAGAGCACTGTTGAGGATAACC AGAGGAAGCTTGCTAAAGAAAGGAACTCAAAAGGAGAAACTTGGGTTCCTAATAATTTCACTGTATCTTATAGCAAAGAAGATGGCTGGGACTGCTCACC TATTCAAGAGAGAGTCCCACCAGCCCCCATTGTTGTCCCCATCTAA
AA sequence Show only first row Show all	>Potri.006G076400.2 pacid=42768190 polypeptide=Potri.006G076400.2.p locus=Potri.006G076400 ID=Potri.006G076400.2.v4.1 annot-version=v4.1 MVSEGNGDMKVVLTKPLSLDGDAHADYKAPNFAQRFLSLFRNVRPGSDLTNFQLTPQFNIPKSQLQCFGESAYSFGKNLLQQCNNAESSLERFISVVAWS ISTTRPPHFGVAPYNPILGETHHVSRGSLNVLLEQVSHHPPVSALHATDDKENIEFIWCQHPVPKFYGTRVEAEVLGKRQLKLLNHGETYMMNSPKLMVR FFPPRVDWIGDVNICCQESGLEAELCYATSSLFGRGGLHSVKGKIYQSSSMKTLYEVEGHWNSTVKAKDINSGKETIIYDAKEVFSELKIAVVEDLQGIR PTESAAVWNEVSKAILSKNWTKAREEKSTVEDNQRKLAKERNSKGETWVPNNFTVSYSKEDGWDCSPIQERVPPAPIVVPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Potri.006G076400 [exp]	0	1
AT2G48090			unknown protein		Potri.014G137850 [exp]	2.00	0.9740
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136600 [exp]	2.44	0.9645	CYP80D1
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.014G175000 [exp]	5.47	0.9549	Pt-ZOG1.11
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136800 [exp]	6.00	0.9439
					Potri.014G069900 [exp]	6.00	0.9391
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	6.00	0.9607
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026500 [exp]	6.70	0.9582
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025800 [exp]	7.93	0.9540
AT2G30210		LAC3	laccase 3 (.1)		Potri.019G124300 [exp]	8.36	0.9447
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.019G004100 [exp]	10.81	0.9451

Compare expression of checked genes

Potri.006G076400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.