Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06980 42 / 6e-05 unknown protein AT2G30230 42 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143700 [exp] 260 / 5e-90 AT5G66580 44 / 7e-06 unknown protein Potri.013G153100 [exp] 48 / 3e-07 AT2G30230 189 / 5e-62 unknown protein Potri.019G123900 [exp] 45 / 4e-06 AT2G30230 159 / 3e-50 unknown protein Potri.015G036800 [exp] 43 / 2e-05 AT1G18290 122 / 1e-35 unknown protein Potri.006G018200 [exp] 38 / 0.0008 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042244 [exp] 48 / 5e-07 AT1G06980 173 / 1e-55 unknown protein Lus10026407 [exp] 45 / 3e-06 AT1G06980 176 / 8e-57 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.006G076500.1 pacid=42769361 polypeptide=Potri.006G076500.1.p locus=Potri.006G076500 ID=Potri.006G076500.1.v4.1 annot-version=v4.1 ATGGGTTGTTGTTTGTCTTGCAAATCCTCTACAGAATTCAACAACATTCGTGTAGTTCACCTGAATGGTTATGTTCAAGAATTTCAAAATCCCGTTTCAG TTAGCCAAGTGACTACAGACCAATCATCCTCAAAGAATCTCGTCTTCACTGCTGCTCAGCTTCTTTCTACAGAGTCCAAACCATTAAAGCCTGATGCTCA GCTTGAAACGGGCCAACTCTACTTCTTGCTTCCGTACTCAATATTACAGCCTGATGTTTCTCCTGTGGACTTTCTTGCTTTAGTAAAGAGGCTCTCTTCA ATAGCAAAATCTAGCAAGTGTTGTCAGACTCAGGATAATTCTTCAGGAACTACTTCCTTGTTGGGCCAGAGTAATCCAATGTGTAGATTATCGGGTAGAA GGTCATGGAAGCCGGTTTTGGATACCATCAGAGAGAAGTCTTTCAACCAGAGGAGTGAATCAGACCTACGGGAAATGGATTTCGAGACCCCAAATAGTAG CTTGAGGTATACTGTATTCTTGTAG
AA sequence Show only first row Show all	>Potri.006G076500.1 pacid=42769361 polypeptide=Potri.006G076500.1.p locus=Potri.006G076500 ID=Potri.006G076500.1.v4.1 annot-version=v4.1 MGCCLSCKSSTEFNNIRVVHLNGYVQEFQNPVSVSQVTTDQSSSKNLVFTAAQLLSTESKPLKPDAQLETGQLYFLLPYSILQPDVSPVDFLALVKRLSS IAKSSKCCQTQDNSSGTTSLLGQSNPMCRLSGRRSWKPVLDTIREKSFNQRSESDLREMDFETPNSSLRYTVFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30230			unknown protein		Potri.006G076500 [exp]	0	1
AT5G57340			unknown protein		Potri.018G090000 [exp]	1.41	0.9182
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156800 [exp]	2.23	0.9194
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.017G017100 [exp]	3.46	0.9136
AT3G14470			NB-ARC domain-containing disea...		Potri.006G271800 [exp]	4.47	0.9108
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098300 [exp]	5.29	0.9071
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437200 [exp]	10.39	0.8656
AT5G52450			MATE efflux family protein (.1...		Potri.010G116700 [exp]	12.96	0.8945
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	14.00	0.9136
AT3G20340			unknown protein		Potri.011G139400 [exp]	17.32	0.8675
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	21.54	0.9019

Compare expression of checked genes

Potri.006G076500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.