Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19160 560 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 556 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 520 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 518 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G57270 515 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT5G25970 237 / 1e-74 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 237 / 2e-74 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 228 / 5e-71 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 228 / 8e-71 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 226 / 1e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143900 [exp] 727 / 0 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 243 / 7e-77 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 240 / 8e-76 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 236 / 4e-74 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 234 / 1e-73 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 226 / 2e-70 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 224 / 2e-69 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 223 / 2e-69 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 223 / 6e-69 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025464 [exp] 669 / 0 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10006952 [exp] 584 / 0 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 501 / 7e-178 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020159 [exp] 431 / 7e-149 AT4G31350 423 / 4e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10005504 [exp] 231 / 3e-72 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 231 / 3e-72 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 233 / 6e-71 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 228 / 6e-71 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 226 / 2e-70 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 226 / 4e-70 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.006G076600.5 pacid=42767007 polypeptide=Potri.006G076600.5.p locus=Potri.006G076600 ID=Potri.006G076600.5.v4.1 annot-version=v4.1 ATGAAGACACCTCAATTGTGGCGTCTAGGCATGGGTGATGTGCAGATCTTGCATGGAGCTCGCCACCGCCCTCCTTTGAAGAGGCCAATGTGGATTATAA TTTTGGTTTCAATGGTCAGCCTGTTTCTAGTCTGTGCTTATATCTATCCACCACAAAGCAGTAGCGCTTGTTATGTATTTTCTTCGAGAGGTTGCAAGGT TCTAACAGACTGGCTTCCACCTGCTCCTACAAGGGAATTTACGGATGAAGAAATTGCTTCTCGTATTGTGGTTAGGGAAATTTTGAATACACCTTCTATT CCTACAAAAAAAGCTAAAATTGCTTTTATGTTTTTGACTACCAGTTTGTTACCTTTCGAGAAACTCTGGGACAAATTTTTCTCTGGCCATGAGGACAGAT TCTCTGTTTATGTGCATGCATCCAAGGAAAAACCAGTTCATGTGAGCCGTTACTTTGTTGATCGAGATGTACGCAGCGACCAGGTGATATGGGGACAAAT TTCAATGATTGATGCAGAGAGACGCCTATTGGCAAATGCTCTTGGAGATCCTGATAACCAACACTTTGTGTTACTTTCTGATAGTTGCGTGCCATTGTAC AAGTTTGACCACATCTACAACTATCTGATGTACTCGAACATGAGCTATCTTGATTGCTTTTATGATCCTGGTCCACATGGGAATGGTAGGTATTCAGAGC ACATGTTACCTGAAATTGAGTTGAAAGACTTTAGAAAGGGTGCACAGTGGTTCTCAATGAAGCGACAACATGCTGTGATAGTTATGGCTGACAGCCTTTA CTACACCAAATTCCGCGATTACTGCAAGCCTGGTTTGGAAGGGAAAAATTGCATTGCCGATGAACATTATTTGCCAACATTTTTCCATATAGTTGATCCT GGTGGAATAGCAAACTGGTCTGTAACACATGTTGACTGGTCTGAGAGAAAGTGGCATCCAAAATTGTATAGGACTCAGGATGTTACTTCTGAACTTCTGA AGAATATTACGTCAATCGATTTGAGTATTCATGTGACAAGTGATGAAAAGAGGGATGTGCAGGTGCAACCTTGCCTATGGAATGGTACCACACGGCCGTG TTACTTGTTTGCGAGGAAATTCCACCCTGAAACTACCGATAATTTGTTGAAGCTTTTCTCCAATTACACATCACTTTGA
AA sequence Show only first row Show all	>Potri.006G076600.5 pacid=42767007 polypeptide=Potri.006G076600.5.p locus=Potri.006G076600 ID=Potri.006G076600.5.v4.1 annot-version=v4.1 MKTPQLWRLGMGDVQILHGARHRPPLKRPMWIIILVSMVSLFLVCAYIYPPQSSSACYVFSSRGCKVLTDWLPPAPTREFTDEEIASRIVVREILNTPSI PTKKAKIAFMFLTTSLLPFEKLWDKFFSGHEDRFSVYVHASKEKPVHVSRYFVDRDVRSDQVIWGQISMIDAERRLLANALGDPDNQHFVLLSDSCVPLY KFDHIYNYLMYSNMSYLDCFYDPGPHGNGRYSEHMLPEIELKDFRKGAQWFSMKRQHAVIVMADSLYYTKFRDYCKPGLEGKNCIADEHYLPTFFHIVDP GGIANWSVTHVDWSERKWHPKLYRTQDVTSELLKNITSIDLSIHVTSDEKRDVQVQPCLWNGTTRPCYLFARKFHPETTDNLLKLFSNYTSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19160			Core-2/I-branching beta-1,6-N-...		Potri.006G076600 [exp]	0	1
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	8.36	0.8335
AT1G23170			Protein of unknown function DU...		Potri.008G131800 [exp]	9.32	0.8382
AT4G24610			unknown protein		Potri.002G104100 [exp]	11.00	0.8058
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	11.22	0.8243	CESA3.1
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	25.29	0.8188
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	31.62	0.7774
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.001G131400 [exp]	33.31	0.7980
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Potri.015G109300 [exp]	33.94	0.7893	Pt-SN4.1
AT3G12010			unknown protein		Potri.016G060500 [exp]	48.00	0.7403
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	50.99	0.7709	Pt-ECA3.3

Compare expression of checked genes

Potri.006G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.