Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31340 157 / 2e-44 myosin heavy chain-related (.1.2) AT2G24420 138 / 5e-37 DNA repair ATPase-related (.1.2) AT4G30090 91 / 4e-20 EMB1353 embryo defective 1353 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003700 [exp] 181 / 7e-53 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) Potri.006G276900 [exp] 174 / 1e-50 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036424 [exp] 135 / 5e-36 AT4G31340 409 / 3e-141 myosin heavy chain-related (.1.2) Lus10026967 [exp] 135 / 1e-35 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2) Lus10020166 [exp] 135 / 1e-35 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2) Lus10041099 [exp] 134 / 1e-35 AT4G31340 397 / 3e-136 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G076700.4 pacid=42767367 polypeptide=Potri.006G076700.4.p locus=Potri.006G076700 ID=Potri.006G076700.4.v4.1 annot-version=v4.1 ATGGCAGCCTCCATAAAATTGCTCTTCTTGTTATTGATATCACTTTCTTTCACCTATATTACATCAGAGCCAGAGCCAGAGCCAGAGCCTCAACGTTTTT CTTTGGAAAATATACTTGACCAACTCAAGTCCCATATCTCTGTGTTAGAGTCAAGGATTGATGACAGAACCCGTGAAATAAGAAGCAAGGATGAGAAAAT TAGACAGATGGAGATGATCATTCATGAGAAATCCAAAAGCATTGATTCATTAATGAGTGAGATAGAATCACTCCAGCCAAAAGGAGTCATAGATGTCAAA GAACAGTCAAGTAAATCATATGCTCGGATCGGTGAACTTGAGAAGCAGGTTGACAAACTTAGAAAGGAATTAGAATCACAAAGTCAGGAAAAAGATTCTG TTGAAATCCGAGCATATGTAGCTGAGAAAAAATACAAAGAGCTTAGTTTGAAATTAGAAACTGTTCAGGTTCATGGAGAATGGTTTCCACACTGGCTTAC AGTTTATTTTTCTAATTTTCAGTACCATGTGGTGACTCACTGGGATGAACACGGAAGACAAGCCTTGGACATGACAGTTCAGAAGGTGCTAGAAAAGAAA TCTCAATTTGACAAGTGGGCCGAGCACCACACTGAAACAATTTATAATAAATGGATCCCCATGTTCAAGGACTGGTTGTTGAACTGTATAAGCTATCTTT GGGAATGCATTCCACCTCAAACTACCAAGTGTGATGAGCTCTTCCATGCATGGAAGAAGACTGCATTACACCATGCTATCAACAGAAAATGGATCCCCAT GTTCAAGGACTGGTCGTTGAACTGTATAAGCTATCTTTGGGAATGCATTCCACCACAAACTACCAAGTGTGATGAGCTCTTCCATGCATGGAAGAAGACT GCATTACACCATGCTATCAACGTACAAGAAATGGCTGGTCCTTACTTGAAAGAAGCAAGGAAGTTTACTCAGCCATGCATCAACCAGGTTGCAAAAATGA CAAGATCCTTAGTTAAAAGGGTGGTGGCAGCAATAAGGACGATGATAGGGTTGATGGTGAAGTGGTGGTAG
AA sequence Show only first row Show all	>Potri.006G076700.4 pacid=42767367 polypeptide=Potri.006G076700.4.p locus=Potri.006G076700 ID=Potri.006G076700.4.v4.1 annot-version=v4.1 MAASIKLLFLLLISLSFTYITSEPEPEPEPQRFSLENILDQLKSHISVLESRIDDRTREIRSKDEKIRQMEMIIHEKSKSIDSLMSEIESLQPKGVIDVK EQSSKSYARIGELEKQVDKLRKELESQSQEKDSVEIRAYVAEKKYKELSLKLETVQVHGEWFPHWLTVYFSNFQYHVVTHWDEHGRQALDMTVQKVLEKK SQFDKWAEHHTETIYNKWIPMFKDWLLNCISYLWECIPPQTTKCDELFHAWKKTALHHAINRKWIPMFKDWSLNCISYLWECIPPQTTKCDELFHAWKKT ALHHAINVQEMAGPYLKEARKFTQPCINQVAKMTRSLVKRVVAAIRTMIGLMVKWW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31340			myosin heavy chain-related (.1...		Potri.006G076700 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	6.00	0.8473	ARR12.2
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Potri.003G126900 [exp]	10.24	0.8125
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.002G113700 [exp]	10.48	0.8681
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	10.58	0.8667
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.010G167901 [exp]	15.49	0.8170
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.014G144600 [exp]	19.89	0.8121
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.003G063200 [exp]	20.24	0.7993
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.004G155700 [exp]	20.39	0.8299
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159200 [exp]	21.35	0.8507
AT5G06850			C2 calcium/lipid-binding plant...		Potri.006G058700 [exp]	31.46	0.8039

Compare expression of checked genes

Potri.006G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.