Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30110 1052 / 0 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 1020 / 0 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 733 / 0 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT5G44790 272 / 8e-76 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 258 / 2e-71 HMA5 heavy metal atpase 5 (.1) AT4G33520 229 / 6e-62 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 208 / 3e-55 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G37270 191 / 5e-50 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT2G41560 89 / 1e-17 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G21180 87 / 4e-17 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075700 [exp] 271 / 9e-76 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 267 / 3e-74 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G105800 [exp] 256 / 2e-70 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 256 / 2e-70 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 250 / 1e-68 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 246 / 2e-67 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G024000 [exp] 216 / 1e-57 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 214 / 5e-57 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 210 / 1e-55 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025467 [exp] 1081 / 0 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006955 [exp] 1075 / 0 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10006956 [exp] 308 / 2e-96 AT2G19110 303 / 9e-97 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038364 [exp] 257 / 7e-71 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 248 / 9e-68 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031273 [exp] 244 / 1e-66 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10008309 [exp] 242 / 7e-66 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10023777 [exp] 219 / 1e-58 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10019313 [exp] 204 / 7e-54 AT4G37270 1101 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10011510 [exp] 195 / 6e-52 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G076900.1 pacid=42769745 polypeptide=Potri.006G076900.1.p locus=Potri.006G076900 ID=Potri.006G076900.1.v4.1 annot-version=v4.1 ATGGCTGCCGAGCTGGAAAAAAGCAACAAGGCAGCTACCAAAAAGTTGCAGAAGAGCTACTTTGATGTGCTAGGCCTTTGCTGTTCTTCAGAGGTTCCTT TGATCGAGAATATCCTCAAGTCACTCGATGGTGTTAAAGATTTTTCAGTGATTGTCCCAACAAGAACAGTGATTGTTTTCCATGACGATCTCCTCATTTC TCAGCTCCAAATTGTTAAGGCTCTAAATCAAGCAAGACTGGAAGCAAATGTTAGAGCATATGGAGAGACCAAGCACCAAAAGAAATGGCCTAGCCCATAT GCAATGGCTTGTGGTGTGTTACTTTTGTTATCACTTTTGAAGTATGTCTATCATCCTTTGCGTTGGTTTGCTATTGGAGCAGTGGCTGTTGGCATCCTTC CCATCTGCTTGAAAGCTGTTGCTTCCTTGAGGAATTTTAGGCTTGATACCAACGTTCTTATGCTTATTGCAGTCATAGGAACGATTGCGATGGATGATTA TATTGAAGCAGGAACTATTGTCTTCCTGTTCACTATTGCAGAATGGCTAGAGTCAAGGGCAAGCCACAAGGCCAGTGCTGTCATGTCATCATTGATGAGC ATAGCTCCACAGAAAGCAGTCATTGCTGAAACTGGGGAAGAAGTGGATGCTGATGAGGTCAAGTTAAACACTGTTCTTGCAGTTAAGGCTGGTGAAGTTA TTCCCATTGATGGAGTTGTTGTCGATGGTAACTGTGAAGTGGACGAGAAAACGTTAACTGGAGAGTCATTTCCAGTCCCCAAACAGGTGGATTCAACTGT CTGGGCAGGCACCATTAACCTAAATGGTTATATGAGTGTTAGAACTACTGCTCTCGCTGAAGACTGTGTGGTGGCTAAAATGGCAAAGCTTGTGGAAGAA GCTCAAAACAGCAAGTCTAAAACTCAAAGGTTCATAGACAAATTTGCTCAATACTATACTCCAGCGGTGATTATTATATCGGCTAGCGTTGCAGTGATAC CGCTTGCACTACGATTGCATGACCGTAATCGCTGGTTTCGTTTAGCATTGGTTGTTTTAGTCAGTGCATGTCCATGTGCTCTAATCCTGTCTACACCGGT TGCAACATTTTGTGCTCTAACAAAGGCGGCATCAGCTGGTCTTCTGATCAAAGGGGGTGACTATCTTGAAACACTAGGCAAGATTAAGGTCATGGCTTTC GACAAAACCGGTACCATAACAAGAGGTGAATTTGTTGTCACAGATTTCCAACCTCTCTGCAATGATATCAGTGTAGACACATTGCTCTATTGGGTATCAA GCATCGAGAGTAAATCAAGTCATCCTATGGCGGCTGCACTTATCGACTATGGAAAGATGCATTCAATAGAGCCACAGCCTGAGAAAGTGGAGGAATTTCA AAATTTTCCTGGAGAAGGAATTCAAGGAAAAATTGAAGGGAAAGATATATATATTGGGAACAGAAAGATTGCTCACAGAGCATCTGGAACAGTTCCAACA CTAGAAGGCGACAAGAAGACAGGAAAGTCTGTCGGATATGTGTACTGTGGAGCAACTCTTGCAGGGATTTTTAGTCTCTCTGATAGCTGTAGGACTGGGG TTGCTGAGGCCATTAAGGAACTGAAGTCATTAGGCATTAAAACTGCAATGCTTACTGGAGATAGTGAAGCGGCGGCTATGTATGCACATGAACAGCTAGA GCATGCTCTTGAAGTTGTTCATGCAGAACTCCTACCTGAAGACAAGGCGACTATTATTAAAGAACTTAAGAAGGAAGGACCAACAGCAATGATTGGAGAT GGTCTGAATGATGCCCCTGCATTAGCTACTGCTGATATTGGCATTTCAATGGGAATTTCAGGTTCAGCACTTGCAACAGAGACAGGGCATGTGATTCTTA TGTCCAATGATCTCAGGAAAGTACCAAAAGCCATCCGGCTTGGCCGTAAATCTCATAGAAAAGTGATTGAGAATGTGATTATGTCCATGACTACAAAGTC TGCTATCCTGGCCTTGGCGTTTGCTGGTCACCCACTTGTTTGGGCAGCCGTTCTTGCTGATGTAGGTACATGCTTGTTGGTCATTTTGAACAGCATGCTG CTTTTACGAGGCACTCATGCAGGGAAATGTAGCAAATCATCAGGTGCGTCGCATTCGCACAAACATGGTACTAAGAATTCATCACACAATCATCGTAATT GTTGCTCTAGCCAAAATGTCAAGAAGGTGGAATGTGGGGCTCAAAAGTGTTGCTCTAGCCCAAAAGTTGAGCAGGTGCAGAGCGGGGCTCTAAACTCAAC CTGTGCCTCAAGGTGTTGCTCTAGTCCAAAAGTTGAGAAGGGGCCAAGTGGGTCTCAAAATTCAAGCTGCACCTCAGGGGTTTGCTCTAGCCCTAAAGTT GAGAAGGTTCACAGTGGAGCTCAAAATTCAAGTTGTGCCTCAGGATGTTGTTCTAGCCAGAAAGTTGAGAAGGTGCAGCTTGCCGCTCAAAATTCAAACT GTGCCTCGGGATGTTGCTCTAGCCAGAAAGCTGAGGTGAAGCTTGTGGCCCAGAATCCAAGCTGCGACTCAGGGTGTTGCTCTAGACCAAAAGTTGAGAA GGTTCAGAGCGAGGATCAAAATTCAAACTGTGCCTCCAGATGTTGCTCTAGCCAGAAAGCTGAGGTGAAGCTTGTGGCCCAGAATCCAAGCTGCGACTCA GGGTGTTGCTCTAGACCAAAAGTTGAGAAGGTTCAGAGCGAGGATCAAAATTCAAACTGTGCCTCCAGATGTTGCTCTAGCCAGAAAGTTGTGAAGGAGC ATTGTGTGGCTCAAAGTTCAAGCCTTGCCTCAGGATGCCAATCTAGCCAACATAGTATCAGCTCATGCAGAAACCAAGAGTGCGCTGACTCAGCTAAGAG CCATGATGCACGTGTAGCAACTAATGCTAGTGGAGTTCATGAAGCCAAGCACCACGATCATAGTTGCTTTAACACAGTCAATCCTAACACGGAGGCAAAT CATCCACGCAGCCATGACTGTTCATCCCCTCCCAAATTGAAACATCTATGCCATAATTCAGTAGAAACTCAAGGTAAATGCTCAGATGGAGATGGTCTTC ATAAGGAAAAACACTGCCACCGTTCACACGGTGAACCTGCTGCTACTCATCATGGTATTCATCACCATTCAAGTCATTCTTCTCATGATTTAGAAGGCAG CCAAAAAACGACAGACAATACTACTAATTGCTGCTCCAAGAGCAGTTGTAAAAACACTATTGACATTCCCAAGAATGAAGAGTCACTAGGAGAGATTGTT GAATCCAGTTGCAGTCCCCAGCATCAACATCAAGAGTTACACCAGGAGTTGAAGAAGTGTTGTACAGGCTGCGCTCCACCTCACACTGTTATTGAAATTG AGCCAACAACCATGCATGCTTGTATGAGCATGGAGAAGAGAGAGATTGGTGGATGTTGCCAGAGCTACATGAAGGAATGCTGTAGCAAGCATGGACACTT TGCAACTGGCTTTGGTGGAGGCTTATCAGAAATCACGATCGAACAAGTATAA
AA sequence Show only first row Show all	>Potri.006G076900.1 pacid=42769745 polypeptide=Potri.006G076900.1.p locus=Potri.006G076900 ID=Potri.006G076900.1.v4.1 annot-version=v4.1 MAAELEKSNKAATKKLQKSYFDVLGLCCSSEVPLIENILKSLDGVKDFSVIVPTRTVIVFHDDLLISQLQIVKALNQARLEANVRAYGETKHQKKWPSPY AMACGVLLLLSLLKYVYHPLRWFAIGAVAVGILPICLKAVASLRNFRLDTNVLMLIAVIGTIAMDDYIEAGTIVFLFTIAEWLESRASHKASAVMSSLMS IAPQKAVIAETGEEVDADEVKLNTVLAVKAGEVIPIDGVVVDGNCEVDEKTLTGESFPVPKQVDSTVWAGTINLNGYMSVRTTALAEDCVVAKMAKLVEE AQNSKSKTQRFIDKFAQYYTPAVIIISASVAVIPLALRLHDRNRWFRLALVVLVSACPCALILSTPVATFCALTKAASAGLLIKGGDYLETLGKIKVMAF DKTGTITRGEFVVTDFQPLCNDISVDTLLYWVSSIESKSSHPMAAALIDYGKMHSIEPQPEKVEEFQNFPGEGIQGKIEGKDIYIGNRKIAHRASGTVPT LEGDKKTGKSVGYVYCGATLAGIFSLSDSCRTGVAEAIKELKSLGIKTAMLTGDSEAAAMYAHEQLEHALEVVHAELLPEDKATIIKELKKEGPTAMIGD GLNDAPALATADIGISMGISGSALATETGHVILMSNDLRKVPKAIRLGRKSHRKVIENVIMSMTTKSAILALAFAGHPLVWAAVLADVGTCLLVILNSML LLRGTHAGKCSKSSGASHSHKHGTKNSSHNHRNCCSSQNVKKVECGAQKCCSSPKVEQVQSGALNSTCASRCCSSPKVEKGPSGSQNSSCTSGVCSSPKV EKVHSGAQNSSCASGCCSSQKVEKVQLAAQNSNCASGCCSSQKAEVKLVAQNPSCDSGCCSRPKVEKVQSEDQNSNCASRCCSSQKAEVKLVAQNPSCDS GCCSRPKVEKVQSEDQNSNCASRCCSSQKVVKEHCVAQSSSLASGCQSSQHSISSCRNQECADSAKSHDARVATNASGVHEAKHHDHSCFNTVNPNTEAN HPRSHDCSSPPKLKHLCHNSVETQGKCSDGDGLHKEKHCHRSHGEPAATHHGIHHHSSHSSHDLEGSQKTTDNTTNCCSKSSCKNTIDIPKNEESLGEIV ESSCSPQHQHQELHQELKKCCTGCAPPHTVIEIEPTTMHACMSMEKREIGGCCQSYMKECCSKHGHFATGFGGGLSEITIEQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	0	1
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.001G057400 [exp]	6.63	0.7923	PHK3,AHK3.1
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.001G235300 [exp]	12.40	0.7350
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	14.69	0.7825
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Potri.015G085000 [exp]	16.40	0.7997	WR3.3
AT1G70100			unknown protein		Potri.008G192800 [exp]	16.91	0.7268
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	18.33	0.7270
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Potri.016G086600 [exp]	19.97	0.6840
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.006G068500 [exp]	22.71	0.6308
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.003G120800 [exp]	28.53	0.7277
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	33.86	0.6994

Compare expression of checked genes

Potri.006G076900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.