Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19090 664 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 659 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 163 / 3e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 162 / 5e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 159 / 3e-40 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT4G39790 156 / 1e-39 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 151 / 8e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 138 / 1e-33 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 119 / 7e-28 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 116 / 1e-26 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177200 [exp] 183 / 2e-48 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 182 / 4e-48 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G077700 [exp] 171 / 3e-44 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 164 / 7e-42 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G249400 [exp] 161 / 3e-41 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 157 / 1e-39 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 157 / 2e-39 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 154 / 1e-38 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G197700 [exp] 150 / 1e-37 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015534 [exp] 575 / 0 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020009 [exp] 459 / 9e-156 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020008 [exp] 305 / 3e-97 AT2G19090 214 / 6e-63 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 172 / 1e-44 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 172 / 1e-44 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 164 / 5e-42 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 164 / 5e-42 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10014445 [exp] 149 / 8e-37 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 146 / 2e-36 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 145 / 2e-36 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.006G077000.1 pacid=42769284 polypeptide=Potri.006G077000.1.p locus=Potri.006G077000 ID=Potri.006G077000.1.v4.1 annot-version=v4.1 ATGGGATGTACTACCTCAAAGCTTGATGAAGAAGAGGCAGTTCAACTTTGTAAAGATCGAAAAAGATACATTAAGCAGGCTGTAGAGCAGCGAACACGAT TTGCATCAGGACACTTGGCTTATATCCAGTCCTTGAAAAGAGTTTTGGCAGCTCTTAGGGATTATGTTGAAGGAGACGAGCCCCGAGAGTTCTTGTTAGA TTCATTTATAACGCCGCCTTTTACGCCTGTGAAGAAAACTAGTCCTGGTTTCATCTCAATTTCGCCGAAATCTTTTTCTGCAGCACCTATCCAATCTGGA CCTACTTCGACTTTGAAAGTAAATTACTTGAGGTCAGGGGGGAACCAATCAGTTTCAGTTGAGGAGAGACCTCAATCACCGGAAACATTCCGAGTCGAAT CGTACTCTCCAATGCATCATTACGGTGCTGATGGATTCTTTGCGATGCAATCCTCACCAATGTATTCTTCGTTCTTCTCATATTCCCCCAACAATAGGCC CAGCATTCCTCCACCGTCTCCTCAAACTTCACAATGGGATGGCTTTTGGAACCCATTTTCATCATTAGACTACTATGGTTATCCCAATCGTAGCAGCCTT GATCAGATGGGTATGGATGATGACATAAGAGGACTAAGGCAGGTTCGAGAAGAAGAGGGGATTCCTGACCTGGAAGATGAAACTGAACAAGAAGACTCAG ATAACAAGGCAAACTTAGCAGGAGAACGAGCTAAGGTTGTTTCCAATTACGCAAGAGAAGAAGTGCTTGTTGAAGATGTTGACGAGGATGAGGATGAGGA GGAGGATGAAGAAACTGATAGTGACTGTGAATGTGAATGTGAAAGTGAACATGAAGTAAATGGGCCGCAATCAGGATTGCAATCACAAGGTAGTGTGAAG ATAGAGCTATCACGGTCTCAAAATTCAGGACAGGTTGAGGTTCACAATCAAGAAATGGCAGCTGGTAATGGTGAAGCCGCCAAGGTTGAAACACCAGGTT TTACTGTCTATGTTAACCGAAGGCCAACAAGCATGGCAGAAGTCATCAAGGATCTTGAAGATCAGTTCACAGTTATTTGCAATTCAGCCAAGGAGGTGTC TGATTTGTTAGAGTCTAGCAGAGCTCAGTACTCATCAACTTCAAATGAACTCACAGCCATGAAAATGTTGAATCCAGTAGCACTGATACGCTCAGCTTCA TCTCGGTCATCATCATCAAGATTTATGATCAATTCTTCAAGTTCTAAAGATGAAGATTGTGATAGCAGTAGTGACTTCTCAGAGGAATCTTGCATGCTCT CAGGTAGTCACCAATCAACGTTGGACAGATTATATGCCTGGGAGAAGAAACTCTATCAAGAAGTTAGGTGTGGAGAAAAGGTTCGAATTGCGTATGAGAA GAAGTGTATGCAACTCAGGAACCAAGATGTTAAAGGAGACGACCCCTCCGTGCTGGATAAAACAAGGACAGCCATTAGGGATCTGCATACTCAGATAAAG GTTTCAATACACTCAGTTGAAGCGGTGTCAAAGAGAATAGAAACTTTAAGGGATGAAGAATTGCAGCCTCAACTTTTGGAATTGGTACAAGGGTTAGCGA GGATGTGGAAAGTAATGGCAGAATGCCACCAGTCACAGAAGCGCACTTTAGATGAAGCCAAGCTTTTACTAGCCGGCACACCTTCAAAACTTGAAGCAAA ACGGCACTCTTCCATGTCAGTTGCTGACCCTCAACGGCTAGCCAGGTCGGCTTCCAACCTAGAGACAGAACTCAGGAATTGGCGAGCGTGTTTTGAGGCA TGGATCACTTCTCAACGATCCTATCTTCACGCGTTAACCGGCTGGCTCCTCAGGTGTGTCAGGTTGGATCCTGACACGTCAAAACTTCCATTCTCACCTC CTCGATCCAGTGGAACCTTTCCAATATTTGGACTTTGCATCCAATGGTCAAGGTTTCTTGATGCAATGCAGGAGATACCAGTTCTTGATGGCCTAGATTT TTTTGCTGCTGGGATGGGGTCAATCTATGCACAGCAGCTAAGAGACGATCCACACAGGGTCCCAGTCAGTTCAAAGAGATTTGGAGCTGGGTTGTCAGTT GAATCAGGAAGAAGTATGGAATTGATGGAGGTTGGTGAAGTAGAAGATGTAATGACTACAGAGAAAATGGCTGAAGTTGCCATAAAGGTACTTTGTGCAG GAATGTCAGTTGCAATGAGCTCACTGACCGAATTTGCTATTGGTTCTGCAGACGGATATGCAGAGCTTGTTAAGCAATGGGAGAATGTCAACTCCCAGAG TTCCAGTAGGGCTGGACATAATCCAGGATATCCCAGTGGATAA
AA sequence Show only first row Show all	>Potri.006G077000.1 pacid=42769284 polypeptide=Potri.006G077000.1.p locus=Potri.006G077000 ID=Potri.006G077000.1.v4.1 annot-version=v4.1 MGCTTSKLDEEEAVQLCKDRKRYIKQAVEQRTRFASGHLAYIQSLKRVLAALRDYVEGDEPREFLLDSFITPPFTPVKKTSPGFISISPKSFSAAPIQSG PTSTLKVNYLRSGGNQSVSVEERPQSPETFRVESYSPMHHYGADGFFAMQSSPMYSSFFSYSPNNRPSIPPPSPQTSQWDGFWNPFSSLDYYGYPNRSSL DQMGMDDDIRGLRQVREEEGIPDLEDETEQEDSDNKANLAGERAKVVSNYAREEVLVEDVDEDEDEEEDEETDSDCECECESEHEVNGPQSGLQSQGSVK IELSRSQNSGQVEVHNQEMAAGNGEAAKVETPGFTVYVNRRPTSMAEVIKDLEDQFTVICNSAKEVSDLLESSRAQYSSTSNELTAMKMLNPVALIRSAS SRSSSSRFMINSSSSKDEDCDSSSDFSEESCMLSGSHQSTLDRLYAWEKKLYQEVRCGEKVRIAYEKKCMQLRNQDVKGDDPSVLDKTRTAIRDLHTQIK VSIHSVEAVSKRIETLRDEELQPQLLELVQGLARMWKVMAECHQSQKRTLDEAKLLLAGTPSKLEAKRHSSMSVADPQRLARSASNLETELRNWRACFEA WITSQRSYLHALTGWLLRCVRLDPDTSKLPFSPPRSSGTFPIFGLCIQWSRFLDAMQEIPVLDGLDFFAAGMGSIYAQQLRDDPHRVPVSSKRFGAGLSV ESGRSMELMEVGEVEDVMTTEKMAEVAIKVLCAGMSVAMSSLTEFAIGSADGYAELVKQWENVNSQSSSRAGHNPGYPSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19090			Protein of unknown function (D...		Potri.006G077000 [exp]	0	1
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.018G113000 [exp]	5.83	0.8307
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G109900 [exp]	8.24	0.7936
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	8.71	0.8564
AT3G14250			RING/U-box superfamily protein...		Potri.003G187700 [exp]	16.30	0.7908
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	17.74	0.8213
AT5G04080			unknown protein		Potri.006G043300 [exp]	21.33	0.8151
AT2G31940			unknown protein		Potri.009G024500 [exp]	22.58	0.7617
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	22.89	0.8182
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	25.76	0.7375
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.013G102600 [exp]	26.53	0.7983

Compare expression of checked genes

Potri.006G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.