Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 664 / 0 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 636 / 0 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 537 / 2e-174 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 509 / 4e-166 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 492 / 1e-157 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 384 / 1e-117 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 367 / 2e-113 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 335 / 9e-102 ARF ARF9 auxin response factor 9 (.1.2) AT2G46530 327 / 3e-99 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G60450 331 / 8e-99 ARF ARF4 auxin response factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145800 [exp] 1675 / 0 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 650 / 0 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 622 / 0 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.004G078200 [exp] 536 / 1e-175 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.005G207700 [exp] 537 / 5e-175 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.001G358500 [exp] 535 / 3e-174 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.011G091900 [exp] 534 / 9e-174 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.017G141000 [exp] 530 / 2e-173 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 528 / 3e-171 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027600 [exp] 1238 / 0 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10022943 [exp] 1091 / 0 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033635 [exp] 600 / 0 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10033598 [exp] 533 / 1e-174 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 534 / 3e-174 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10010969 [exp] 531 / 4e-174 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 530 / 2e-173 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 531 / 4e-171 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10007386 [exp] 525 / 4e-171 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10024320 [exp] 505 / 2e-165 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.006G077800.1 pacid=42770504 polypeptide=Potri.006G077800.1.p locus=Potri.006G077800 ID=Potri.006G077800.1.v4.1 annot-version=v4.1 ATGAAGTCACCGGCAACCGGTGCCGGAGGAACCGCCACAACCTCCACAGCTACCAACGGTGAAGGGGCAGAGAAGAAGAGCATAAACCCTGAGTTATGGC AAGCATGTGCAGGACCACTAGTGAACTTGCCGGCGGCCGGAACTCATGTGGTCTACTTCCCCCAAGGGCATAGTGAACAGGTTGCAGCGTCCATGAAAAA GGATGTAGATGCCCAAATCCCAAACTACCCAAATCTTCCGTCGAAGCTACTTTGTCTCCTTCACAATGTCACCTTACATGCGGACCCAGAAACAGATGAA GTTTATGCTCAGATGACCCTTCAACCTGTTTCTTCCTTTGACAAGGATGCATTATTGAGGTCAGATCTTGCACTGAAGTCAAATAAACCACAGACAGAGT TTTTCTGTAAAACATTAACAGCAAGTGATACGAGCACTCATGGAGGTTTCTCTGTTCCTCGTCGCGCAGCTGAGAAAATCTTCCCACCACTTAATTTCTC CTTGCAACCACCTGCTCAAGAACTTGTAGCCAGGGATTTGCATGATAATGTTTGGACTTTCCGGCATATCTATCGTGGACAACCAAAGCGTCATTTGCTT ACAACTGGATGGAGCCTATTTGTCAGTGGAAAGAGGCTTTTTGCCGGTGACTCAGTTTTATTTATTAGAGATGAAAAGCAGCAGCTTCTATTGGGCATCA GAAGGGCTAACAGGCAACCTACCAACTTATCATCATCAGTATTGTCAAGTGATAGCATGCATATTGGGATCCTAGCTGCTGCAGCCCATGCAGCAGCAAA CAATAGCCCCTTTACTGTGTTCTACAATCCCAGGGCAAGTCCATCAGAATTTGTTATCCCTTTAGCCAAGTATTACAAGGCAGTGTACAGCAACCAAATA TCCCTTGGAATGCGCTTTCGCATGATGTTTGAAACTGAAGAGTCAGGAACAAGAAGGTATATGGGCACCATTACAGGTATCAGTGATCTTGATCCTGTAA GATGGAAAAATTCACAATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGGTGAAAGACGCAATCGAGTCTCAATATGGGAGATTGAACCAGT GACTGCTCCGTTTTTTATATGTCCTCCTCCATTCTTTAGATCTAAGCGTCCAAGGCAACCAGGAATGCCAGATGATGATTCCTCTGATTTTGATAGCTTA TTCAAGAGGACTATGCCTTGGCTTGGTGATGAGTTCTGCATGAAAGATCCCCAGGCTCTCCCTGGCCTAAGCTTAGTCCAGTGGATGAACATGCAGCAAA ACCCTTCCCTGGCCAACTCAATGCAACCCAACTACATGCAATCCTTGTCAGGATCTGTTCTGCAGAATCTTCCTGGAGCTGATCTTTCCCGTCAGTTAGG CTTGTCATCACCTCAAATGCCTCAGCCAAACAACGTACAGTTCAATGCCCAAAGGCTGCCTCAGCAAGCACAACAGCTTGATCAGCTTCCAAAGCTACAG TCCTCACTGATCCCACTGGGTTCCATCATGCAGCCACAGCAACAGATGGGTGACATCACTCAACAATCAAGGCAAAATTTAATGGCTCAAACTCTACCCT CAAGTCAAGTTCAAGCCCAACTTCTGCAGCCTCAAACTCTTGCCCAGACCAATAACATTCTTCAGCAACAGCCATCTATACAAAGTCATCAGCTTCTTAG AAACCTTCCTCAAACCTTGCACCACCAGCAGCAGCAGAATCAACAGCAACATATTATGGGTCAGAACCAACAGCAAAGCCTAATGCAATCCCAGTTGTCT GATCATGTAAACCAACATATGCAAATTTCAGACAATCACATTCAGCTTCAACTTTTGCAGAAGCTTCAGCAGCAACAGCAATCACTTTTAGCACAGCAAT CTGCAATGCAGCAGGCTGGTCAACTCGGGCAGCTTCAAGATTCACAAAGACAGCTCCTGGATGCATCTCAGAGTTTTTCTAGGTCTATGGCACCCAGCCA AATGTTGGAAATCCCTCAAACTGCACCCACCTCTCTCCCTCAGCCAAATACCATTCCACAACAGTTGACTAAGAATAACAACCAAAACAATGTTCGATTC TCACATCCGCCTCAGCAGCCAAAACTTCAACAACAGCATACTGGCATACTGCCATTGTCTGAAATGGCAGGTCATATGGGGCTTCTGCCGAGCTCAATGG CCAATCAGCTCTCCGCAGCTGGTAGCAGTATATTGACTGCAGCTGCAGGACAGGGACAGTCTGGGATTACTGATGATGTTCCTTCTTGTTCTACTTCACC TTCCACAAACAATTGTCCGAACATTGTTCAACCAATGATCAACAGTCGGGCCCACCGAAGCACAGCAATGGGGGAGGACATGGCTCAGTCTGCTGCCACA CTCTTGAATCCTAGCGCTTTGGAAACCGTGTCCTCTAACGGTAATTTAGTTAAAGATCTGCTGCAGAAATCTGAGGTTAAGCCGTCGTTGAACATCTCCA AGAATCAAAGCCCTGGATTTTTTACCCCGCAAACATACCTAAATGGGGTAGCTGCTCAGACAGATTATTTGGACACGTCATCATCTACAACATCAATTTG CCTTTCTCAAAATGATGTCCATTTGCAGCAGAATAACAATTCACTGTCTTATAATCCACAACCAATGTTGTTGAGAGACACAATCCATGATGGTGAACTC CAGGCAGATCTGAGGAATAATATTCCATGTGGGACGAACATTGATAGCCAACTTACGATGCCAGTGAGTTCTGACAATTTATTCACAAAGGGCATGGTGG GGCTGGGGAAGGACTTCTCAAATAATTTTTCTTCGGCAGGCATGCTTACAAGTTGTGAAAACTCCAAAGATCCTCAACAGGATCTTTCATCCTCTATGGT TTCCCAGTCATTTGGAGTTCCAGAAATGCCATTCAATTCAATCAACTCAGCAATCAATGACAATAGCTGCTTGAACAGAGGTGCTTGGGCTCCTCCACAG CAACAGTTTCAGCGAATGCGAACATATACAAAGGTGTACAAACGTGGAGCTGTGGGAAGGTCAATTGACATAGCCCGGTATTCAGGTTATGCTGAGCTTA AGCAAGATCTGGCTCGTAGGTTTGGTATAGAGGGACAGTTCGAAGATCAACAAAGGATAGGCTGGAAACTTGTCTACAGGGATCTTGATGATGATGTCCT GCTAGTAGGGGATGACCCTTGGGAAGAGTTCGTGAACTGTGTCCGCTGCATCAAGATCCTGTCTCCTCAAGAAGTTCAACAGATGAGCTTGGATGGAGAT TTTGGGAACTCTGTCCTTCCTAATCAAGCCTGCAGTAGTTCTGATAATGTCAATGCATAA
AA sequence Show only first row Show all	>Potri.006G077800.1 pacid=42770504 polypeptide=Potri.006G077800.1.p locus=Potri.006G077800 ID=Potri.006G077800.1.v4.1 annot-version=v4.1 MKSPATGAGGTATTSTATNGEGAEKKSINPELWQACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDE VYAQMTLQPVSSFDKDALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLNFSLQPPAQELVARDLHDNVWTFRHIYRGQPKRHLL TTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSNQI SLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDDSSDFDSL FKRTMPWLGDEFCMKDPQALPGLSLVQWMNMQQNPSLANSMQPNYMQSLSGSVLQNLPGADLSRQLGLSSPQMPQPNNVQFNAQRLPQQAQQLDQLPKLQ SSLIPLGSIMQPQQQMGDITQQSRQNLMAQTLPSSQVQAQLLQPQTLAQTNNILQQQPSIQSHQLLRNLPQTLHHQQQQNQQQHIMGQNQQQSLMQSQLS DHVNQHMQISDNHIQLQLLQKLQQQQQSLLAQQSAMQQAGQLGQLQDSQRQLLDASQSFSRSMAPSQMLEIPQTAPTSLPQPNTIPQQLTKNNNQNNVRF SHPPQQPKLQQQHTGILPLSEMAGHMGLLPSSMANQLSAAGSSILTAAAGQGQSGITDDVPSCSTSPSTNNCPNIVQPMINSRAHRSTAMGEDMAQSAAT LLNPSALETVSSNGNLVKDLLQKSEVKPSLNISKNQSPGFFTPQTYLNGVAAQTDYLDTSSSTTSICLSQNDVHLQQNNNSLSYNPQPMLLRDTIHDGEL QADLRNNIPCGTNIDSQLTMPVSSDNLFTKGMVGLGKDFSNNFSSAGMLTSCENSKDPQQDLSSSMVSQSFGVPEMPFNSINSAINDNSCLNRGAWAPPQ QQFQRMRTYTKVYKRGAVGRSIDIARYSGYAELKQDLARRFGIEGQFEDQQRIGWKLVYRDLDDDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGD FGNSVLPNQACSSSDNVNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	0	1
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.007G112800 [exp]	1.41	0.8120
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	2.00	0.8358
AT5G53060			RNA-binding KH domain-containi...		Potri.012G017200 [exp]	5.56	0.7488
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	8.00	0.7835	STGA1.3
AT5G49960			unknown protein		Potri.013G128100 [exp]	8.36	0.7834
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	9.16	0.7830
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	9.48	0.7516
AT5G65170			VQ motif-containing protein (....		Potri.005G076600 [exp]	11.22	0.7664
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	12.60	0.7960
AT2G24960			unknown protein		Potri.013G025200 [exp]	13.26	0.7617

Compare expression of checked genes

Potri.006G077800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.