Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACCC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35360 926 / 0 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 421 / 8e-140 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT1G36180 217 / 1e-60 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G36160 216 / 2e-60 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G29900 52 / 9e-07 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146300 [exp] 1008 / 0 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 424 / 5e-141 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.005G169100 [exp] 215 / 4e-60 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 210 / 2e-58 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.010G023100 [exp] 47 / 3e-05 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017534 [exp] 957 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 949 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 948 / 0 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 879 / 0 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042901 [exp] 516 / 0 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 427 / 3e-142 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10028199 [exp] 294 / 6e-98 AT5G35360 296 / 1e-99 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10022078 [exp] 234 / 3e-73 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10024748 [exp] 216 / 3e-60 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10006934 [exp] 211 / 2e-58 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0483 [poplar] [flax] PreATP-grasp PF00289 [poplar] [flax] Biotin_carb_N Biotin carboxylase, N-terminal domain CL0105 [poplar] [flax] Hybrid PF02785 [poplar] [flax] Biotin_carb_C Biotin carboxylase C-terminal domain CL0179 [poplar] [flax] ATP-grasp PF13535 [poplar] [flax] ATP-grasp_4 ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.006G078200.2 pacid=42768873 polypeptide=Potri.006G078200.2.p locus=Potri.006G078200 ID=Potri.006G078200.2.v4.1 annot-version=v4.1 ATGGAGGCTACGTTGCCTGTTTGCAAATCTGTTACCTCTACTCCTGGTTTATTCATGGGGAAAACTAGTGGAATCAGGAGTTCTCAATGCAGCTTTATGA TGGGAAATAAGGTTAACTTTCCTAGACAAAGAGCTCAGACTGCCCACGTTCACTGTGCTAAGAATGGAGGAGCTCTTGGGGTTACATGTCGCGCGGAAAA AATTCTGGTAGCAAACAGAGGAGAGATTGCTGTTCGTGTTATTCGAACTGCACATGAGATGGGGATACCATGTGTAGCTGTTTACTCCACCATAGATAAG GATGCACTTCATGTGAAATTGGCTGACGAATCAGTTTGCATCGGTGAAGCACCCAGCAGTCAGTCGTACTTAGTGATCCCAAATGTTTTATCTGCTGCTA TAAGTCGTAGATGTACAATGCTGCATCCTGGATATGGCTTCCTTGCTGAAAATGCTGTATTTGTGGAAATGTGCAGAGAACATGGAATAAACTTTATTGG GCCTAATCCTGACAGTATAAGGGTCATGGGTGACAAATCAACTGCTAGAGAAACAATGAAGAAGGCAGGGGTTCCAACTGTACCAGGAAGTGATGGCTTA TTACAGAGTACTGAGGAAGGAGTAAGGCTCGCCAACGAGATTGGTTATCCTGTGATGATCAAGGCAACGGCAGGTGGTGGAGGACGTGGAATGCGGCTCG CCAAAGAACCTGATGAGTTTGTAAAGTTGCTACAGCAAGCTAAAAGTGAGGCTGCTGCTGCATTTGGAAATGATGGAGTTTATTTGGAGAAGTATGTTCA AAATCCCAGACACATTGAATTCCAGGTTCTTGCAGACAAATTCGGTAATGTTGTTCATTTTGGTGAGCGAGACTGCAGTATTCAGAGACGAAACCAAAAG CTGTTGGAAGAAGCACCATCTCCAGCTTTGACTCCTGAGTTACGGAAGGCCATGGGTGATGCAGCAGTTTCAGCCGCAGCATCCATAGGGTACATTGGTG TTGGAACAGTTGAGTTCCTTTTGGATGAAAGGGGTTCCTTCTACTTCATGGAAATGAACACTCGAATCCAGGTGGAGCATCCGGTGACTGAAATGATTTC TTCTGTTGATTTGATTGAGGAACAAATTCGTGTAGCCATGGGAGAGAAACTTCGATACAAACAGGAAGATATTGTTCTTAGAGGACATTCAATTGAATGC CGTATCAATGCAGAAGATGCTTTTAAGGGATTCCGACCTGGGCCTGGGAGAATAACAGCATATTTGCCATCTGGAGGCCCGTTTGTTAGAATGGATAGCC ATGTTTATCCTGATTATGTTGTTCCTCCAAGCTATGATTCCCTACTTGGAAAGCTTATTGTCTGGGCTCCAACAAGAGAAAAGGCAATTGAGCGAATGAA AAGGGCTCTTGATGACACTATTATTACTGGAGTTCCGACGACTATAGATTACCACAAACTTATCCTTGAAATTGAGGACTTCAAAAATGGAAATGTTGAT ACCGCTTTCATTCCGAAGCATGAAAAGGAGTTAGCAGCGCCACAACAAATCATACCAGCCAAACAGTTGACCAATTCAGCCGCATAA
AA sequence Show only first row Show all	>Potri.006G078200.2 pacid=42768873 polypeptide=Potri.006G078200.2.p locus=Potri.006G078200 ID=Potri.006G078200.2.v4.1 annot-version=v4.1 MEATLPVCKSVTSTPGLFMGKTSGIRSSQCSFMMGNKVNFPRQRAQTAHVHCAKNGGALGVTCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK DALHVKLADESVCIGEAPSSQSYLVIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKKAGVPTVPGSDGL LQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQK LLEEAPSPALTPELRKAMGDAAVSAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIRVAMGEKLRYKQEDIVLRGHSIEC RINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILEIEDFKNGNVD TAFIPKHEKELAAPQQIIPAKQLTNSAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.006G078200 [exp]	0	1	Pt-ACCC.2
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Potri.009G082100 [exp]	1.41	0.8289
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	3.46	0.8176
AT5G55610			unknown protein		Potri.001G366000 [exp]	3.60	0.7442
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Potri.010G142100 [exp]	6.92	0.7973
AT1G42960			unknown protein		Potri.007G064100 [exp]	13.49	0.7608
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	21.21	0.7408
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	22.24	0.7494
AT5G07670			RNI-like superfamily protein (...		Potri.003G107900 [exp]	29.22	0.6529
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	33.49	0.6995	B5.2
AT5G53070			Ribosomal protein L9/RNase H1 ...		Potri.012G017300 [exp]	33.70	0.7887

Compare expression of checked genes

Potri.006G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.