Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 825 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 769 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 753 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 746 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 730 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 729 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G12000 691 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 680 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 667 / 0 protein kinase family protein (.1) AT1G17540 562 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002400 [exp] 855 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 766 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 704 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170742 [exp] 702 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 701 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 676 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 649 / 0 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170901 [exp] 514 / 4e-175 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 397 / 5e-127 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021596 [exp] 865 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 833 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 827 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 808 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 781 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 725 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 724 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 700 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 697 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10042205 [exp] 655 / 0 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G078500.2 pacid=42767559 polypeptide=Potri.006G078500.2.p locus=Potri.006G078500 ID=Potri.006G078500.2.v4.1 annot-version=v4.1 ATGTATAGCAAACAAATTACCAGCCAAGCCAAATCGCTGTTCCTTCCATTTCGTTGCTTCTGCACAAGAAAGGAGATAAAATGCAACGAAGTTGTCGTGG AGAAAATGGACGTTGCCAAAGGAATAATAGAATACGTTACCACAAATGCAATTGAGATTCTGATACTTGGTTCATCATCGAAGGGAGGCCTTGTCAGAAA ATTCAAGACCACAGATATTCCAGGTAATGTGTCCAAAGGAGCGCCAGGCTTCTGCTCTGTATATGTCATCAGCAAAGGAAAGATCTCATCGGTGCGATCT GCTAGTGGTCCACCACCTCCAAAACACTCCATTCAAACTCAAATGCAGAGCAGGGATACAGTTGAAACCCTTTTCAAGTCTAGCCTAGGTCCCAGAGTAC CAGAGAGGTCACCATATACCCTGCAAGGCCTTCAAGAAGATATGGAAATCAAGTCACCATTCACTAGAAGAGGTGGAATCGCCAAATATGAGCCCTCCAT TCCAGATTCTGACATATCATTTGTAAGCAGTGGAAGGCCAAGCATTGATCACACATTTCCTGCTATCTACGATGCTTTTGAAACTGGAATGACACCTCGG CTTTCAAACGCTTTCGAAACTGGAATGACACCTCGGCTTTCAAATGGCTCGGATTATGACTATAGATCCTTTGGGTCATTGTACTCAGGAAACAAATCAA TAGATTCAAGTTCACAGTATAATTTCTCATCAACCTCACAAGAAAGTAGCAACACATCATGGTCGTCTTCACAGAACATGGACGACATGGAATCTGAGAT GCGGAGGCTCAGACTAGAGCTCAAGCAAACAATGGACATGTATAGCTCAGCCTGCAGAGAAGCACTCACAGCAAAACAGAAGGCCAGGGAACTTCATCAT TGGAAATTGGAAGAACAACAGAGATCAGAAGGAGCGCGATTGGCAGAGGAAGCTGCCTTGCAACTTGTAGCAAAGGAGAGAGCTAAGTGTAAAGCAGCCA TTGAGGCAGCTGAATCATCTCAAAGGATTGCCGAATTGGAATTACAAAAAAGACTAAATGCAGAAATGATAGCTCAAAAGGAATTCCAGGAGAAGAATAA GGCACTAGCATCCATTGCAAACAGTGATCTTCGATATCGAAAATACACGATTGAGGAGATTGAAGCAGCAACAGATGAGTTTTCAAACTCGCTCAAGATT GGAGAAGGAGGTTATGGGCCTGTTTACAGGTCCTATCTGGATCATACACCAGTGGCCATTAAAGTTTTACGTCCTGATGCAGCTCATGGAAGGTCACAGT TTCAGCAAGAGGTTGAAGTATTATCCTGCATAAGGCATCCAAACATGGTTCTCCTCCTGGGAGCCTGCCCAGAGTATGGCTGCTTAGTCTATGAGTACAT GGCCAACGGAAGCTTGGAAGACTGCCTGTTCCACCGAGGAAACAGTCCACCTCTTTCTTGGCAATTAAGATTCCGGATTGCTGCAGAAATCGGCACTGGC CTTCTTTTCCTCCATCAAACCAAGCCAGAACCACTTGTGCACCGCGACCTCAAACCTGGCAACATTTTGCTTGACCGCAACTATGTCAGTAAGATTAGTG ATGTTGGCTTGGCCAGGCTTGTCCCTCCATCAATAGCCAACACTGTTACTCAATATCGCATGACATCAACAGCTGGAACATTCTGTTACATTGACCCAGA ATATCAGCAGACAGGAATGCTAGGGATAAAATCCGATATTTACTCACTTGGTATCCTGCTTCTACAAATAATAACAGCCAAGCCACCTATGGGTTTAACT CATCATGTTGAGAGGGCCATTGAGAAAGGAACTTTTGCAGAGATGCTTGACCCAGCCGTTCTAGACTGGCCCATTGAGGAAGCCATGAACTTTGCCAAGT TATCTCTTTGTTGTGCAGAACTGAGGCGGAAAGATAGACCAGATCTCGGAGCGGTCATACTACCTGAGCTTAAGAGATTGAGAGAACTTGCTGAGGAAAA CATGCCTAGCGTCATGCCTGGGGGCAGCACAGGAAGCTCCCCTTATCACAGCCAATTTTCCTCAGTTCAAGATGTGATCACAGCGAGCTACAATCTGGAT ATGATAGCTCAAGAAGCCACCCAAGCACACCATCTAGAGGAAGAAGATGAAGGACGATTGAAAAACACTTTGTTGTAG
AA sequence Show only first row Show all	>Potri.006G078500.2 pacid=42767559 polypeptide=Potri.006G078500.2.p locus=Potri.006G078500 ID=Potri.006G078500.2.v4.1 annot-version=v4.1 MYSKQITSQAKSLFLPFRCFCTRKEIKCNEVVVEKMDVAKGIIEYVTTNAIEILILGSSSKGGLVRKFKTTDIPGNVSKGAPGFCSVYVISKGKISSVRS ASGPPPPKHSIQTQMQSRDTVETLFKSSLGPRVPERSPYTLQGLQEDMEIKSPFTRRGGIAKYEPSIPDSDISFVSSGRPSIDHTFPAIYDAFETGMTPR LSNAFETGMTPRLSNGSDYDYRSFGSLYSGNKSIDSSSQYNFSSTSQESSNTSWSSSQNMDDMESEMRRLRLELKQTMDMYSSACREALTAKQKARELHH WKLEEQQRSEGARLAEEAALQLVAKERAKCKAAIEAAESSQRIAELELQKRLNAEMIAQKEFQEKNKALASIANSDLRYRKYTIEEIEAATDEFSNSLKI GEGGYGPVYRSYLDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDCLFHRGNSPPLSWQLRFRIAAEIGTG LLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSIANTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGILLLQIITAKPPMGLT HHVERAIEKGTFAEMLDPAVLDWPIEEAMNFAKLSLCCAELRRKDRPDLGAVILPELKRLRELAEENMPSVMPGGSTGSSPYHSQFSSVQDVITASYNLD MIAQEATQAHHLEEEDEGRLKNTLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24370			Protein kinase protein with ad...		Potri.006G078500 [exp]	0	1
AT2G39910			ARM repeat superfamily protein...		Potri.008G063500 [exp]	6.48	0.7425
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.014G081200 [exp]	15.49	0.7376
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	17.02	0.7448
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.004G172100 [exp]	19.79	0.7312
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.013G000400 [exp]	46.01	0.6774
AT5G54860			Major facilitator superfamily ...		Potri.011G137400 [exp]	75.73	0.7045
AT4G19070			Putative membrane lipoprotein ...		Potri.001G132400 [exp]	83.39	0.6825
AT5G05800			unknown protein		Potri.005G153700 [exp]	101.64	0.6935
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	122.04	0.6565
AT2G41990			unknown protein		Potri.009G140600 [exp]	127.33	0.6786

Compare expression of checked genes

Potri.006G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.