Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35390 660 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 613 / 0 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT4G31250 393 / 2e-127 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 357 / 1e-113 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 321 / 9e-100 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 285 / 1e-86 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 265 / 2e-79 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 265 / 4e-79 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 262 / 7e-78 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 259 / 5e-77 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147300 [exp] 1043 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 600 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 600 / 0 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 577 / 0 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 566 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 354 / 2e-116 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 332 / 2e-104 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 312 / 3e-96 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 310 / 4e-96 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027597 [exp] 574 / 0 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 566 / 0 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 563 / 0 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 388 / 7e-126 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 387 / 3e-125 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 386 / 1e-124 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 362 / 7e-118 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 343 / 1e-112 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 341 / 2e-107 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 320 / 2e-99 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G078600.1 pacid=42770599 polypeptide=Potri.006G078600.1.p locus=Potri.006G078600 ID=Potri.006G078600.1.v4.1 annot-version=v4.1 ATGCCATCAAAACTTCACCACCTTCCCAAGCTTCCTCTCCACCCCCTCCCACCCCAACATTATAGTCCTCTGTTGAAGCCATTCTTGACTGCAAAGGGCG CGCATGCCCCTCCACCAGTGCGCGTCCCACCACACTGTAGCATCATGGCTTTTAAAGATAAACCCTCATTTGTTCTTGTCTTTCTACTTGTATCCCTCCA TTTTGTTGCCTCTTTGGGACTGACAGACTCAGAAATCCTCCTTAAGTTCAAGGGTTCTTTATCGAACGCATCTGCATTGTCTGACTGGAGTGACAAGACC ACACCATGCACAAAAAATAATGCAACAAATTGGGCTGGTGTAATTTGTGTTGACGGGATCCTTTGGGGTTTACAACTCGAAAATATGGGGCTGGCTGGCA AGATTGACATGGAAACTCTACAGGCTTTGCCAGATTTGAAAACACTCAGCATCATGAACAATAACTTCGATGGTCCCATGCCAGAGTTCAAGAAAATTGT TTCATTGAGAGCGCTTTATTTGTCCAACAACCATTTCTCAGGGGTGATCCCACTGGATGCTTTTGATGGCATGTTGAAACTGAAGAAAGTGTATTTAGCA CAAAATGAGTTTACTGGTGCCATTCCTTCATCTTTGATTGCCCTGCCCAAGCTTTTGGATTTGAGGCTTGAAGGCAACCAATTTACTGGGCAGCTACCAG ATTTGACTCAGAATCTTCTTTCATTCAGCGTGTCAAACAATGCATTGGAGGGGCCAATCCCCGCAGGTCTCAGTAAGATGGACTCCAGCTCCTTTTCAGG CAACAAAGGTCTATGTGGACCGCCGTTAAAGGAATGTAATACCATCAACAGCAACTCTGACTCCAAGAAACCACCTGTGCTACTAATCGTGATCATTGCT GCAGTTGTGGGATTACTACTGGGTGCCATTGTTGCAGCATTCTTGTTCCTTCGTCGTCAAAGCCAAAGACAACCATCAGCCTCAATAGAAGCACCACCAC CACCAATACCGTCAAACCTCAAAAAGAAAACGGGTTTCAAGGAAGAAAACCAAAGCCCATCAAGCTCACCAGACCACTCGGTAGGTAGCAAGAAAGGGGA ACCTCCAAAGCTGTCCTTCGTGAGGGATGATAGGGAGAAGTTTGATTTGCCAGACTTGTTAAAGGCCTCGGCTGAGATATTAGGAAGCGGTTGCTTCGGG TCCTCTTACAAAGCAGCGCTTAACTCTGGGACGATGATGGTGGTTAAGAGGTTTAAGCAGATGAATAATGTCGGGAGAGAAGAGTTTCAAGAGCATATGA GGAGGTTAGGGAGATTGAAGCACTCTAACTTACTTCCTCTTGTGGCTTACTATTATAGGAAGGAAGAGAAGCTCTTGATTACCGACTTTGTTGAGAAAGG CAGCCTAGCTGTTCATCTTCATGGTCATCAAGCTCTAGGTCAACCAAGCCTTGACTGGCCAAGCAGATTGAAGATTGTCAAAGGAGTAGTAAGGGGTCTT GCATACCTCTACAAAGACCTTCCCAACATAATTGCTGCCCACGGCCACCTTAAATCTTCCAATGTTCTTCTCACTCAATCCAACGAGCCCTTGCTCACCG ACTATGGACTAGTTCCTGTGATCAACCAAGAGAATGCTCAAGAGCTCATGGTAGCCTACAAGTCCCCTGAATACTTGCATCACGGCCGGATTACCAAGAA GACCGATGTATGGAGTCTAGGGATATTGATACTTGAGATCTTATCAGCAAAGTTGCCAGCAAATTTCGTACCGCAAGGCAAGGGAAGCGAGGAGGAAGAT TTGGCAAATTGGGTCAATTCTGTTCCTCATGAAGAGTGGACTAATGTGGTGATTGATAAGGATATGACCAACGGGCCAACAAAGCAAAATGGTGGTGGTG AAAGTGAGGTGATCAAGCTATTGAAGATTGGTTTGAGTTGTTGTGAAGCGGATGTGGAGAAGAGGATAGACTTGAAGGAAGCTGTTGAGAGGATTGAAGA AATAAAAGAGAGAGACAGTGATGATGATTTTTTCTCCTCATATGCTAGTGAAGGAGACATGAGATCTTCAATAGGAAAGTCTGATGACATCACATTCTCT TAA
AA sequence Show only first row Show all	>Potri.006G078600.1 pacid=42770599 polypeptide=Potri.006G078600.1.p locus=Potri.006G078600 ID=Potri.006G078600.1.v4.1 annot-version=v4.1 MPSKLHHLPKLPLHPLPPQHYSPLLKPFLTAKGAHAPPPVRVPPHCSIMAFKDKPSFVLVFLLVSLHFVASLGLTDSEILLKFKGSLSNASALSDWSDKT TPCTKNNATNWAGVICVDGILWGLQLENMGLAGKIDMETLQALPDLKTLSIMNNNFDGPMPEFKKIVSLRALYLSNNHFSGVIPLDAFDGMLKLKKVYLA QNEFTGAIPSSLIALPKLLDLRLEGNQFTGQLPDLTQNLLSFSVSNNALEGPIPAGLSKMDSSSFSGNKGLCGPPLKECNTINSNSDSKKPPVLLIVIIA AVVGLLLGAIVAAFLFLRRQSQRQPSASIEAPPPPIPSNLKKKTGFKEENQSPSSSPDHSVGSKKGEPPKLSFVRDDREKFDLPDLLKASAEILGSGCFG SSYKAALNSGTMMVVKRFKQMNNVGREEFQEHMRRLGRLKHSNLLPLVAYYYRKEEKLLITDFVEKGSLAVHLHGHQALGQPSLDWPSRLKIVKGVVRGL AYLYKDLPNIIAAHGHLKSSNVLLTQSNEPLLTDYGLVPVINQENAQELMVAYKSPEYLHHGRITKKTDVWSLGILILEILSAKLPANFVPQGKGSEEED LANWVNSVPHEEWTNVVIDKDMTNGPTKQNGGGESEVIKLLKIGLSCCEADVEKRIDLKEAVERIEEIKERDSDDDFFSSYASEGDMRSSIGKSDDITFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35390			Leucine-rich repeat protein ki...		Potri.006G078600 [exp]	0	1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	6.92	0.9741
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141125 [exp]	7.48	0.9734
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.002G227800 [exp]	10.24	0.9722
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105100 [exp]	10.95	0.9402
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.007G068200 [exp]	16.00	0.9717
AT5G63520			unknown protein		Potri.012G100600 [exp]	16.30	0.9720
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.010G063000 [exp]	16.55	0.9359
					Potri.010G076350 [exp]	19.89	0.9526
AT1G62760			Plant invertase/pectin methyle...		Potri.003G113600 [exp]	22.00	0.9400
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.017G122950 [exp]	22.27	0.9396

Compare expression of checked genes

Potri.006G078600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.