Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10572 250 / 7e-81 APEM9 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040572 [exp] 342 / 2e-116 AT3G10572 229 / 1e-72 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1) Lus10021597 [exp] 304 / 4e-101 AT3G10572 186 / 1e-55 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G078700.1 pacid=42768474 polypeptide=Potri.006G078700.1.p locus=Potri.006G078700 ID=Potri.006G078700.1.v4.1 annot-version=v4.1 ATGGGTGAGACTGATTCGAGTTCTTCTTCAATTTGGCAAGAAATTGAACAATCTGAGAGCTACTTAGTTTGTTCCATGTATGAAGAGGCAGCGACTTTAG CTTCTTCAATTGTAAGACAATTAAAAGGCAGCAACATCTCTGATAATAATGAAGCTTTTGATGAGAATGAGTTGTTTGACATGTTGGAATCAGCTGGAAT GGTGTTTGTTCAGGCTTTGAATCAACTTGGCAGGACATCAGCTATTTTAAACGAGCTTAAAGTGCTGTTTGTTTCTGCTACAGCTATTCCTGTTCAAGTT CTTCTCACAGGGGCATGTTTTCAGATATCAGGAGCTTCTTCTGCTGGTGTCCGAGAGTTTCTTGAGGAGTTCCTCAGCAACTGGAGTTTAGTGGATGGAC AACACTATGTTCTTGTTGGTGCAGAAGTAGATGTTGATGTCCAGGATGGATGTGACAGGAGGTGTATTATGGAAGTTGACAAGTATATGGAGGTTGTTGA AGTCTATGCTGTGACACTTCTTGGAACGACTCTGAAGGACATGGACAATGCAATCTCATGGGTCGAGAAATCTGCATTACCTGAGGAAAGACGACAGGTA CTTTTGAGGCGACTACACTCTCTATATTCTCTCAAAACCATCAATTCATCACAAGTCTCAGCGGTTATGCACGAAAATAACCACGAAGCTCATTATTCTT TGTCAAAAGAACTAAATGGTTTCGAGGGATCTCCAAAAGGATTAGAAGCCAATTACCTGCCTCCTGGAGAGAATAATACAAAACAAACAATTTTGAAGCT GTCGAGGCGTGTAGATCCATGTCTTTGGTGGTTCCGGTCAGTGAATTTGAAGTTTGGGAATGTTCGAGTGGTGGTAACAAATGGGAAAATTCTCCTTGGA TTTCTCTTCCTTCTTACATATTATGTTCTTCGGAGGAAAGGGGCTACATTGAATGGACTTGTTAGGAGGCAAGTTTCGGCAGCAAAGAAGGCTATGGTAG ACTTGTGGCAGCTTGCATTTTCATATCAAGTGAACCCTCTAGCTGCGGTTCAACCTCTCCCTACTGCAACACGAGGCGGCCGGTGA
AA sequence Show only first row Show all	>Potri.006G078700.1 pacid=42768474 polypeptide=Potri.006G078700.1.p locus=Potri.006G078700 ID=Potri.006G078700.1.v4.1 annot-version=v4.1 MGETDSSSSSIWQEIEQSESYLVCSMYEEAATLASSIVRQLKGSNISDNNEAFDENELFDMLESAGMVFVQALNQLGRTSAILNELKVLFVSATAIPVQV LLTGACFQISGASSAGVREFLEEFLSNWSLVDGQHYVLVGAEVDVDVQDGCDRRCIMEVDKYMEVVEVYAVTLLGTTLKDMDNAISWVEKSALPEERRQV LLRRLHSLYSLKTINSSQVSAVMHENNHEAHYSLSKELNGFEGSPKGLEANYLPPGENNTKQTILKLSRRVDPCLWWFRSVNLKFGNVRVVVTNGKILLG FLFLLTYYVLRRKGATLNGLVRRQVSAAKKAMVDLWQLAFSYQVNPLAAVQPLPTATRGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Potri.006G078700 [exp]	0	1
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.016G037600 [exp]	2.44	0.8149
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Potri.010G002000 [exp]	10.19	0.7934	Pt-PDK.1
AT5G39590			TLD-domain containing nucleola...		Potri.005G236400 [exp]	10.95	0.7179
AT4G10170			SNARE-like superfamily protein...		Potri.003G048600 [exp]	15.09	0.7292
					Potri.007G049700 [exp]	17.32	0.7756
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.013G087000 [exp]	20.39	0.7434	PIN9.2
AT1G67050			unknown protein		Potri.017G115700 [exp]	27.20	0.7612
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	37.49	0.7149
AT4G31860			Protein phosphatase 2C family ...		Potri.001G043000 [exp]	44.01	0.7227
AT1G79260			unknown protein		Potri.010G175600 [exp]	47.37	0.6611

Compare expression of checked genes

Potri.006G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.