Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26590 385 / 5e-135 RPN13 regulatory particle non-ATPase 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G027722 [exp] 110 / 3e-30 AT2G26590 92 / 4e-24 regulatory particle non-ATPase 13 (.1.2.3) Potri.003G027520 [exp] 74 / 6e-17 AT2G26590 61 / 1e-12 regulatory particle non-ATPase 13 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040571 [exp] 338 / 2e-116 AT2G26590 343 / 1e-118 regulatory particle non-ATPase 13 (.1.2.3) Lus10021598 [exp] 297 / 2e-99 AT2G26590 306 / 2e-103 regulatory particle non-ATPase 13 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF04683 [poplar] [flax] Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor CL0266 [poplar] [flax] PF16550 [poplar] [flax] RPN13_C UCH-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G078800.1 pacid=42769127 polypeptide=Potri.006G078800.1.p locus=Potri.006G078800 ID=Potri.006G078800.1.v4.1 annot-version=v4.1 ATGACGGCTTCTTCATCAGCTGAAGCTATTCCAGCAATGCAGGAAATTATGTTGGAGTTTCGTGCTGGTAAAATGGTTTTTGATGGAAAAAAGGTTGTTC CTGATTTGCGAAAAGGACTAGTTCGCGTTGGAAGGGGTGAGGAGGGCTTGCTTCATTTTCAGTGGCTTGATAGGAATTTGAATGCTGTGGAAGATGATCA GATTATTTTTCCTGAAGAGGCTGTTTTTGAGAAGGTTAATCAAGTTTCGGGAAGAGTTTACATCTTGAAATTCAATACAGATGACCGGAAGCTTTTTTTT TGGATGCAGGAGCCAAAAGCTGAAGAGGACTCACAATTATGTAGTTCTGTCAACTATTATATCAATCTTCCATTAGAGTTCCTTGATGAAGAAGAGCCTG ATGCTGCTGCTCCTTTGCAAGTTTCTGAAGACATGCTTGAAGATAATGTCTCATCAAGGGCTGGAGACTTAGTTGTCCCAAACCTTGGTGCAGAAGCAAT TAGTGATGTAACCTCTTCATCAGGACCAGTGAAAATGGAAGACTTGCAGAGAATCCTGAGTAATATTGGTGCAAGAGGTGGTTCGGGTGATCCAGATGAA GGCTTAGGATTAGGGGATCTACTGAAGCCTGATTTGATAATGCCATTGATTGAGACATTGTCTCTTGAAGAAGGATTAACATCTCACTTACCTGAGGGTC ACTGGACTCCAGAGGATATCTTAGATTTGTTGCAGAGCCCTCCTTTCCGTCAGCAAGTGGATTCTTTTACTTATGTTCTCCGAACTGGACAAATAGATTT GTCTCAATTTGGGGTCGACCCCAGTAAATACAAGTTCACAGTTTTATCTTTTCTGGAGGCACTTGAAGATTCAGTTTCCAAAATGTCTGAGGAATCCACC CAAGAGGGCAAGGATTTGAGACCTCAGTCTCATAACCGCGACGATCCAATGGACGAGGGCAAGTAG
AA sequence Show only first row Show all	>Potri.006G078800.1 pacid=42769127 polypeptide=Potri.006G078800.1.p locus=Potri.006G078800 ID=Potri.006G078800.1.v4.1 annot-version=v4.1 MTASSSAEAIPAMQEIMLEFRAGKMVFDGKKVVPDLRKGLVRVGRGEEGLLHFQWLDRNLNAVEDDQIIFPEEAVFEKVNQVSGRVYILKFNTDDRKLFF WMQEPKAEEDSQLCSSVNYYINLPLEFLDEEEPDAAAPLQVSEDMLEDNVSSRAGDLVVPNLGAEAISDVTSSSGPVKMEDLQRILSNIGARGGSGDPDE GLGLGDLLKPDLIMPLIETLSLEEGLTSHLPEGHWTPEDILDLLQSPPFRQQVDSFTYVLRTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKMSEEST QEGKDLRPQSHNRDDPMDEGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	0	1
AT1G28120			unknown protein		Potri.003G162600 [exp]	1.00	0.7982
AT1G02410			cytochrome c oxidase assembly ...		Potri.001G078500 [exp]	2.82	0.7626
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.002G045700 [exp]	3.60	0.7554	TSA1.2
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	5.29	0.7513	SAD1.1
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	5.65	0.7812
AT2G04940			scramblase-related (.1)		Potri.015G079500 [exp]	7.07	0.7748
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	8.30	0.7107
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Potri.019G072700 [exp]	10.39	0.7815	Pt-PFI.1,TFCFE
AT5G23200			unknown protein		Potri.005G092000 [exp]	10.58	0.7873
					Potri.011G126600 [exp]	11.83	0.7650

Compare expression of checked genes

Potri.006G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.