Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04940 1394 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G61210 74 / 5e-13 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 72 / 1e-12 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 72 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 70 / 6e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 64 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 59 / 7e-09 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 60 / 8e-09 transducin family protein / WD-40 repeat family protein (.1) AT5G13480 57 / 4e-08 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G32700 57 / 4e-08 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148066 [exp] 783 / 0 AT4G04940 701 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G148132 [exp] 622 / 0 AT4G04940 442 / 1e-148 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 71 / 3e-12 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 66 / 7e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 62 / 8e-10 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 62 / 1e-09 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G087200 [exp] 60 / 4e-09 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G115300 [exp] 59 / 6e-09 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.003G197900 [exp] 60 / 8e-09 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036625 [exp] 1420 / 0 AT4G04940 1396 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10035842 [exp] 1162 / 0 AT4G04940 1137 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011224 [exp] 81 / 4e-15 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 81 / 4e-15 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10026837 [exp] 65 / 2e-10 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 62 / 2e-09 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 61 / 2e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 58 / 1e-08 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017570 [exp] 58 / 1e-08 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 58 / 3e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF04192 [poplar] [flax] Utp21 Utp21 specific WD40 associated putative domain
Representative CDS sequence Show only first row Show all	>Potri.006G078900.1 pacid=42768865 polypeptide=Potri.006G078900.1.p locus=Potri.006G078900 ID=Potri.006G078900.1.v4.1 annot-version=v4.1 ATGGGTATCTTCGAACCATTCAGAGCCATCGGATACATAACAACCGGCGTGCCGTTTTCCGTCCAAAGATTGGGCACTGAAACCTTTGTCACAGTCAGTG TAGGCAAAGCTTTTCAAGTTTACAATTGTGCAAAGCTCACTTTAGTCATCGTCAGTCCTCAACTCCCTCACAAAATACGCGCTTTAGCTTGCTATCGTGA CTTCACCTTCGTCGCCTACGCAACCCACATCGCCGTCTTCAAACGCGCCCATCAAGTGACGTTGTGGAGTAGGCATAGTGCGAAGGTGAATTCGTTGATG GTATTTGGGGATTATGTGATAAGTGTTGATGTTGATGGCAATTTGTTTATTTGGGGTTTTAAAGGGCTTGATGAGAGTAATGTGCCGGTTGGGCATATTC TGTTTGGGGATAAATTTACGCCAACTTGTATGATGCATCCGGATACTTATTTGAATAAGGTTTTGATTGGGAGTCAGGAGGGGGGTTTACAGCTTTGGAA TGTTAGTACAAAGAAAATGTTGTATGAGTTTAAAGGGTGGGGTTCGTCAGTGACTAGTTGTGTGTCCTCGCCTGCGTTGGATGTTGTTGCGGTTGGCTGT GTAGATGGGAAGATTCATGTGCATAATATTCGTTATGATGAGGAGGTGGTTACGTTTGTGCATTCTATGCGTGGTGCTGTGACCTCATTGTCTTTCAGTA CAGATGGACAACCACTTTTAGCGTCAGGAGGTTCATCTGGTGTTATAAGCATATGGAATCTGGAGAAAAGAAAACTACAATCAGTTGTTAGAGAGGCTCA TGATAGTTCGATAATTTCATTGCACTTTTTAGCTAATGAACCTGTGCTGATGAGTTCATCAGCAGACAACTCTATTAAAATTTGGATTTTTGACACAACT GATGGAGATCCTCGACTTTTACGTTTTCGAAGTGGACACAGTGCTCCCCCACTTTGCATAAGGTTCTATGCAAATGGGAGACACATTCTATCTGCTGGTC AGGATCGTGCCTTTCGTCTTTTCTCTGTCATACAGGACCAACAAAGTAGAGAGCTCTCTCAGCGTCATGTATCCAAACGAGCCAAGAAACTTCGGGTAAA GGAGGAAGAACTGAAATTGAAGCCTGTCATTGCCTTTGATTGTGCTGAAATTCGGGAGCGGGATTGGTGCAATGTGGTAACTTGTCATATGGATACTGCA CAAGCATATGTGTGGAGGCTTCAAAATTTTGTCATTGGGGAGCATATCCTGAGACCATGCCCAGAAAATCTAACACCTGTTAAGGCCTGCACCATTAGTG CATGTGGCAACTTTGCAATCCTAGGAACTGCGGGTGGCTGGATAGAGCGATTCAACCTTCAATCAGGAATTAGCCGAGGAAGTTACATGGATGTGTCAGA GAGAGGAAGTTGTGCCCATGAGAGTGAAGTGGTTGGAGTTGCTTGTGATTCCACAAATACCCAAATGATAAGTGCAGGATATCATGGGGATGTAAAGGTT TGGGATTTCAAGGGACGTGCATTAAAATCCAGATGGGAAGTTGGTTGTTCTCTGGTTAAGATTGTTTATCATCGACTTAACGGTCTGTTGGCTACTGTGG CAGATGATTTTGTTATCCGTTTGTTTGATGCCGTGGCACTGAGAATGGTTCGTAAATTTGAAGGTCATGCAGACCGTATTACAGATTTATGTTTCAGTGA GGATGGGAAATGGCTTTTGTCATCCAGTATGGATGGGACCCTTAGAATTTGGGATGTCATCTTAGCAAGACAAATAGATGCAGTGCATGTTGATGTTTCT ATCACAGCATTGTCTTTGTCACCAAATATGGATGTGCTGGCAACTACCCATGTCGATCAAAATGGGGTCTATTTATGGGTTAATCAGTCAATGTTCTCTG GAGCTTCAAACATTGATTCTTATGCAAGTGGGAAAGAAGTTGTGAACGTAAAGTTACCATCTCTATCTTCAGTTGAAGGTTCAAATGTTGAGAATGAGGA CACCGAGAAGCCTATTGTGAACCAGTCAGTCTCAAATGAAGTTTCAACTTTTCCGGCTTTCAGTCAGCAAATTCCAGATCTTGTTACTCTCTCACTGTTG CCTAAAAGCCAATGGCAGAGTTTGATCAACTTAGACATTATAAAGGTGCGCAATAAACCAATTGAGCCTCCAAAGAAACCTGAGAAGGCTCCTTTCTTCT TGCCTTCAGTTCCATCTCTTTCTGGAGAAATATTATTTAAACCCAGTGAGCCTGTGGATGGGGAGGATACCAAACCTGACAAAGCAGAGAGTGATAAGAG AAAACTAGGCATTCCAGAAACTCAATTTTTGGAGCTTCTTCAGTCTTCATCTGAAATGAAAAATTTTTCAGCGTTCACTGAATATATCAAAGGTTTATCT CCTTCAAATTTGGATATGGAACTTAGAATGTTTCAGATAATAGATGAGGATGAGGATGAGGAAGAACTCGTAAAGAGACCTGAGTTTATTTCAATCGAGC TGCTTCTTGACTATTTCATTCATGAAATATCCTGCAGAAACAATTTTGAGTTTGTACAGGCCGTCACAAGATTATTTTTGAAGATACATGGTGAAACAAT TAGGTGCAATTCAAAATTACAGGACAAGGCAAGGAAGCTCTTAGACACTCAGAGTGCAGTTTGGCAGAGAGTAGATAAATTGTTCCAAAGTGCTAGATGC ATGGTCACTTTCCTCAGCAATTCACAGTTTTAA
AA sequence Show only first row Show all	>Potri.006G078900.1 pacid=42768865 polypeptide=Potri.006G078900.1.p locus=Potri.006G078900 ID=Potri.006G078900.1.v4.1 annot-version=v4.1 MGIFEPFRAIGYITTGVPFSVQRLGTETFVTVSVGKAFQVYNCAKLTLVIVSPQLPHKIRALACYRDFTFVAYATHIAVFKRAHQVTLWSRHSAKVNSLM VFGDYVISVDVDGNLFIWGFKGLDESNVPVGHILFGDKFTPTCMMHPDTYLNKVLIGSQEGGLQLWNVSTKKMLYEFKGWGSSVTSCVSSPALDVVAVGC VDGKIHVHNIRYDEEVVTFVHSMRGAVTSLSFSTDGQPLLASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVLMSSSADNSIKIWIFDTT DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKRAKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA QAYVWRLQNFVIGEHILRPCPENLTPVKACTISACGNFAILGTAGGWIERFNLQSGISRGSYMDVSERGSCAHESEVVGVACDSTNTQMISAGYHGDVKV WDFKGRALKSRWEVGCSLVKIVYHRLNGLLATVADDFVIRLFDAVALRMVRKFEGHADRITDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAVHVDVS ITALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASNIDSYASGKEVVNVKLPSLSSVEGSNVENEDTEKPIVNQSVSNEVSTFPAFSQQIPDLVTLSLL PKSQWQSLINLDIIKVRNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSEPVDGEDTKPDKAESDKRKLGIPETQFLELLQSSSEMKNFSAFTEYIKGLS PSNLDMELRMFQIIDEDEDEEELVKRPEFISIELLLDYFIHEISCRNNFEFVQAVTRLFLKIHGETIRCNSKLQDKARKLLDTQSAVWQRVDKLFQSARC MVTFLSNSQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	0	1
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	1.41	0.9068
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	1.41	0.9314
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	2.00	0.8908
AT1G79150			binding (.1)		Potri.005G096900 [exp]	3.00	0.9027
AT5G07900			Mitochondrial transcription te...		Potri.003G190400 [exp]	3.46	0.8640
AT5G41190			unknown protein		Potri.003G124700 [exp]	4.47	0.8841
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	5.65	0.8782
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	6.48	0.8804
AT4G31520			SDA1 family protein (.1)		Potri.008G182900 [exp]	7.34	0.8840
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	7.34	0.8777

Compare expression of checked genes

Potri.006G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.