Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAS.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07050 1335 / 0 CAS1 cycloartenol synthase 1 (.1) AT3G45130 1002 / 0 LAS1 lanosterol synthase 1 (.1) AT1G78955 938 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78950 919 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78960 917 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G66960 872 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 859 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT5G36150 813 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT1G78500 798 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15340 772 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148800 [exp] 1467 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.007G002200 [exp] 1248 / 0 AT2G07050 1186 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079200 [exp] 1127 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002400 [exp] 940 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 924 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.011G085000 [exp] 914 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 910 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.001G049100 [exp] 897 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 890 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014538 [exp] 1367 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10032146 [exp] 1366 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 1195 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 879 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1) Lus10013546 [exp] 866 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 842 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 835 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 808 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016439 [exp] 692 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 672 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.006G079300.2 pacid=42767788 polypeptide=Potri.006G079300.2.p locus=Potri.006G079300 ID=Potri.006G079300.2.v4.1 annot-version=v4.1 ATGTGGAGGCTAAAGATAGCAGCAGGAGGAAATCCATGGCTAAGAACAAATAATGATCATATTGGAAGACAGATTTGGGAATTCGATCCGAAACTAACTC TATCTCCCGAAGAGATCTCAGAGATCGAAAATGCGCGTCAGAACTTTACTAAAAATCGGTTTCAATCCAAGCATAGTGCAGATCTAATCATGCGCATGCA GTTTGAGAAGGAGAATCCGGTGTCGGAAGTGTTGCCGCAGGTGAAATTGAAGGAGAGTGAGAAAGTTACGGAGGAGGCGGTTACTACAACGTTGAAGAGA GGTTTGGATTATTATTCGAGTATTCAAGCTCATGATGGACACTGGCCTGGTGATTATGGTGGTCCTATGTTTCTTATGCCAGGATTGGTGATTACTTTGT CAATTACTGGAGCACTACATGCAGTGTTATCAGATGAACATAAAAAGGAGATAATTCGGTACCTTTACAATCATCAGAACAGAGATGGGGGATGGGGTTT GCATATTGAGGGACCGAGTACGATGTTTGGTTCGGTGTTGAATTATGTTACTTTAAGGTTGCTTGGAGAAGGGCCGAATGATGGAGAAGGTGCGATGGAG AAAGCACGTGATTGGATTTTGAATCATGGTGGTGCGACTATGATAACATCATGGGGGAAAATGTGGCTTTCAGTACTTGGAGTGTTTGAGTGGTCTGGAA ATAATCCAATGCCCCCTGAGATGTGGCTTCTTCCTTATTTGCTCCCAGTTCATCCAGGAAGGATGTGGTGTCACTGCCGGATGGTCTATCTGCCTATGTC CTACTTATATGGGAAGCGGTTTGTTGGCCCAATCACACCAACAATTTTATCTTTGCGAAAGGAGCTGTTCACTGTCCCATATCATGAAATAGAATGGAAT CAAGCGCGCACCCTATGTGCAAAGGAGGACTTATATTACCCTCACCCTCTGGTGCAAGATGTACTTTGGGCATTGCTTGACAAGGCTGCCGAACCTGTTC TAATGCATTGGCCTGGAAAGAAGTTGAGAGAAAAGGCACTTTGTACTGCAATTGAGCACATACACTATGAAGATGAAAATACTCGTTATCTTTGCATAGG ACCTGTAAATAAGGTGTTAAATATGCTTTGTTGTTGGGTGGAAGACCCTAACTCAGAAGCTTTCAAGTTGCATATTCCTAGAATACAAGATTACCTCTGG CTTGCTGAAGATGGAATGAAAATGCAGGGTTACAATGGAAGTCAATTGTGGGACACTGCTTTTGCCGTTCAAGCAATTATTTCAACTAATCTTGTTGAGG AATACAGTCCAACTTTAAAAAAAGCACATGCATTCGTTAAAAATTCACAGATTTTGGAAGATTGCCCTGGAGATCTTCATTTCTGGTATCGCCATATTTC CAAAGGTGCATGGCCTTTCTCAACTGCAGATCATGGATGGCCCATCTCAGATTGCACAGCAGAGGGACTAAAAGCTGCTCTCTTATTATCAAAAATTCCA TCTGAGATTGTTGGGGAACCGTTAGTTGCAAACCGATTTTATGATGCAGTAAATGTCCTCCTCTCATTACAGAATGGGGATGGTGGTTTTGCAACATATG AGCTCACGAGATCTTACAGCTGGTTAGAGTTGATCAACCCAGCTGAAACTTTTGGTGACATTGTTATTGATTACCCATATGTTGAATGTACTTCAGCTGC AATTCAAGCTTTGACATCGTTTAAGAAATTATATCCTGGACACCGGTCAGAAGAAATAGAAAGTTGTATCAGAAAGGCGACTATGTTCATTGAAAGTATC CAGGAGAAGGATGGCTCATGGTATGGCTCATGGGGTGTTTGCTTCACCTATGGCATATGGTTTGGCATAAAAGGGCTGGTGGCTGCTGGAAAAAACTTCA ATAATAGCTCTAGCATTCGTAAAGCCTGTGATTTTCTGCTGTCCAAACAGTGTTCTTCTGGTGGTTGGGGAGAGAGTTATCTTTCATGTCAAAACAAGAC ATATTCAAATATTGAAGGGAACAGAGCTCATGTGGTAAATACAGCATGGGCTATGTTGTCTCTCATTGAAGCTGGGCAGGCTGAGAGAGAGCCAGAACCA TTGCACCGTGCAGCAAGATATTTGATAAATTCCCAGATGGAAAATGGAGACTTTCCGCAGCAGGAAATCATGGGAGTTTTCAATAGGAATTGTATGATAA CATATGCTGCCTACAGGGACATTTTCCCCATTTGGGCATTGGGAGAATACCGGTGTCGGGTGCTGCAGGCCAAGGCTTCATAG
AA sequence Show only first row Show all	>Potri.006G079300.2 pacid=42767788 polypeptide=Potri.006G079300.2.p locus=Potri.006G079300 ID=Potri.006G079300.2.v4.1 annot-version=v4.1 MWRLKIAAGGNPWLRTNNDHIGRQIWEFDPKLTLSPEEISEIENARQNFTKNRFQSKHSADLIMRMQFEKENPVSEVLPQVKLKESEKVTEEAVTTTLKR GLDYYSSIQAHDGHWPGDYGGPMFLMPGLVITLSITGALHAVLSDEHKKEIIRYLYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPNDGEGAME KARDWILNHGGATMITSWGKMWLSVLGVFEWSGNNPMPPEMWLLPYLLPVHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTILSLRKELFTVPYHEIEWN QARTLCAKEDLYYPHPLVQDVLWALLDKAAEPVLMHWPGKKLREKALCTAIEHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRIQDYLW LAEDGMKMQGYNGSQLWDTAFAVQAIISTNLVEEYSPTLKKAHAFVKNSQILEDCPGDLHFWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKIP SEIVGEPLVANRFYDAVNVLLSLQNGDGGFATYELTRSYSWLELINPAETFGDIVIDYPYVECTSAAIQALTSFKKLYPGHRSEEIESCIRKATMFIESI QEKDGSWYGSWGVCFTYGIWFGIKGLVAAGKNFNNSSSIRKACDFLLSKQCSSGGWGESYLSCQNKTYSNIEGNRAHVVNTAWAMLSLIEAGQAEREPEP LHRAARYLINSQMENGDFPQQEIMGVFNRNCMITYAAYRDIFPIWALGEYRCRVLQAKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	0	1	CAS.3
AT1G68060		ATMAP70-1	microtubule-associated protein...		Potri.010G106100 [exp]	2.44	0.9221
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.008G167800 [exp]	3.46	0.9028
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	3.74	0.8978
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	4.79	0.9252
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	7.74	0.8945	Pt-GF14.4
AT5G26850			Uncharacterized protein (.1.2....		Potri.013G008500 [exp]	8.00	0.8971
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	8.48	0.8950	Pt-SPIKE1.3
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	12.64	0.9016
AT3G61650		TUBG1	gamma-tubulin (.1)		Potri.014G094900 [exp]	12.80	0.8545	Pt-TUBG1.1,TUBG1
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	14.69	0.9158

Compare expression of checked genes

Potri.006G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.